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monarch-initiative
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genophenocorr
Genotype Phenotype Correlation
https://monarch-initiative.github.io/genophenocorr/stable
MIT License
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Humanize the analysis runner
#131
ielis
closed
4 months ago
0
Protein Service
#130
lnrekerle
closed
4 months ago
0
Fix bug in summarizing errors and warnings of the notepad.
#129
ielis
closed
5 months ago
0
Formalize handling and reporting of input errors
#128
ielis
closed
5 months ago
1
Develop strategy for handling errors in the input data
#127
ielis
closed
5 months ago
0
Multiple testing correction strategy
#126
ielis
opened
6 months ago
2
Add visualization prose
#125
ielis
closed
4 months ago
0
Draw variants, transcript and protein.
#124
ielis
opened
6 months ago
4
Minor updates
#123
ielis
closed
6 months ago
0
Run notebooks in CI
#122
ielis
closed
6 months ago
0
Update notebooks
#121
lnrekerle
closed
6 months ago
1
Handle phenopackets with unparsable data
#120
ielis
closed
5 months ago
1
Handling phenopackets with legacy CNV
#119
ielis
closed
2 weeks ago
2
Remove `ProteinMetadata` from `TranscriptAnnotation`
#118
ielis
closed
4 months ago
0
removing redudant code to gen phenopackets and adding phenopackets fr…
#117
pnrobinson
closed
6 months ago
0
Removing redundant phenopacket generation code
#116
pnrobinson
closed
6 months ago
0
Removing redundant phenopacket gen code SUOX
#115
pnrobinson
closed
6 months ago
0
Setup notebook for visualizers
#114
ielis
closed
6 months ago
1
Improve reporting errors during validation of phenotypic feature in `PhenotypeCreator`.
#113
ielis
closed
5 months ago
1
Create an example notebook to gather PTPN11 data for plotting purposes
#112
ielis
closed
6 months ago
2
TranscriptAnnotation hgvsc_id
#111
pnrobinson
closed
4 months ago
1
genotype_for_sample()
#110
pnrobinson
closed
1 month ago
3
"toString" for Variant
#109
pnrobinson
opened
6 months ago
1
Erroneous error while loading individuals to cohort. Proteins are not expected to have coordinates for splice variants
#108
pnrobinson
closed
6 months ago
1
Used tqdm to create a progress bar
#107
lnrekerle
closed
7 months ago
0
Loading bar
#106
lnrekerle
closed
7 months ago
0
Tx viz - DO NOT MERGE YET
#105
pnrobinson
closed
6 months ago
7
replace phenopackets with phenopackets of phenopacket-store repository
#104
pnrobinson
closed
6 months ago
2
draw_variants
#103
pnrobinson
closed
6 months ago
3
`ProtFeatureTypePredicate` and `ProtFeaturePredicate` should use regions to determine overlaps
#102
ielis
closed
4 months ago
0
Add methods for simple genome arithmetics
#101
ielis
closed
7 months ago
0
Implement `distance_to`, `overlaps` and `contains` methods on regions
#100
ielis
closed
7 months ago
0
Created new file testing groups against each other
#99
lnrekerle
closed
7 months ago
0
Report the number of performed tests in `GenotypePhenotypeAnalysisResult`
#98
ielis
opened
7 months ago
0
Allow the user to limit the tested phenotypic features
#97
ielis
opened
7 months ago
1
Error messages
#96
lnrekerle
closed
6 months ago
1
Support numerical tests for GA4GH measurements
#95
ielis
opened
8 months ago
0
Fix change length bug
#94
ielis
closed
8 months ago
2
Plug VariantValidator HGVS finder into Phenopacket parsing workflow
#93
ielis
closed
8 months ago
0
Review `CohortAnalysis._remove_low_hpo_terms`
#92
ielis
closed
7 months ago
2
Discuss statistical tests
#91
ielis
closed
8 months ago
2
Move phenopacket generating code to phenopacket store
#90
pnrobinson
closed
6 months ago
3
Possible bug in counting phenotypic features
#89
ielis
closed
6 months ago
1
Streamline predicate/analysis workflow
#88
ielis
closed
7 months ago
2
Streamline predicate/analysis workflow
#87
ielis
closed
7 months ago
0
Add action that runs notebooks
#86
ielis
closed
6 months ago
1
Created Cohort Viewer that shows Excluded Patients
#85
lnrekerle
closed
8 months ago
0
Fail if the phenopacket has variant in mismatching genome build
#84
ielis
closed
5 months ago
3
better error messages
#83
pnrobinson
closed
6 months ago
3
https://github.com/monarch-initiative/genophenocorr/issues/81
#82
pnrobinson
closed
8 months ago
0
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