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montilab
/
hypeR
An R Package for Geneset Enrichment Workflows
https://montilab.github.io/hypeR-docs/
GNU General Public License v3.0
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Incorrect column names when calling hyp_show() function on KS-Test results
#57
pbock1
opened
4 months ago
0
multihyp dot plot significance legend is not showing properly (solution included)
#56
Vanessa104
opened
6 months ago
3
Sync
#55
anfederico
closed
1 year ago
0
Feature dotplot size
#54
andrewdchen
closed
1 year ago
0
Add in latest dev changes
#53
anfederico
closed
1 year ago
0
Leading Edge Reporting with commas, and updated tests
#52
andrewdchen
closed
1 year ago
0
Pushing to upstream on Bioc
#51
federicomarini
closed
1 year ago
0
KS Leading Edge update to dev branch
#50
andrewdchen
closed
1 year ago
0
Leading Edge Hits Feature for KS Test
#49
andrewdchen
closed
1 year ago
0
Leading edge feature for KS Test
#48
andrewdchen
closed
1 year ago
0
Hits names should be quoted (like in the csv format)
#47
tetomonti
opened
1 year ago
0
rgsets does not support proper object "duplication" by value
#46
tetomonti
opened
1 year ago
0
MSigDB C7 retrieval fails
#45
hypercompetent
opened
2 years ago
0
.kstest needs to match ks.test (modulo the sign)
#44
tetomonti
opened
2 years ago
0
rctbl_build does not work with method="ks"
#43
tetomonti
opened
2 years ago
1
X-axis and Outputting Gene Overlap Size
#42
NicNikoloutsos
closed
2 years ago
2
Error in hyp_hmap
#41
tetomonti
closed
2 years ago
2
.check_overlap returns a fraction, not a percentage
#40
sidorov-si
closed
2 years ago
1
KS with mx.diff=TRUE (GSVA-like)
#39
tetomonti
opened
2 years ago
0
hypeR-dot plots with KS test should incorporate directionality information
#38
tetomonti
opened
2 years ago
0
How to get signetures enriched in a pathway?
#37
jasmine0605
closed
2 years ago
1
error in GSEA about weighted signatures
#36
viviyanran
closed
3 years ago
1
sizes argument in hyp_dots function
#35
kotliary
closed
2 years ago
1
Duplicated gene symbols in the output of msigdb_download
#34
kotliary
closed
3 years ago
6
Enrichment maps unable to export in a .tiff format
#33
morgancy711
closed
3 years ago
2
reactable should be "wider"
#32
tetomonti
closed
3 years ago
1
quiet
#31
tetomonti
closed
3 years ago
0
Error in conexion
#30
AnaBVA
closed
3 years ago
1
GSEA arguement not recognised hypeR
#29
Mbxlasi
closed
3 years ago
1
Plots not diplaying in jupyter notebook
#28
Hrovatin
closed
3 years ago
3
work with single-cell RNA-seq data?
#27
gt7901b
closed
3 years ago
5
Weighted and unweighted "kstest" giving the same results
#26
apcamargo
closed
3 years ago
5
Show number of nested signatures in reactable tables
#25
anfederico
closed
4 years ago
0
Set rownames=FALSE when calling rctbl_hyp
#24
tetomonti
closed
4 years ago
0
hyp_to_rmd(file_path = ) has problems with relative paths
#23
jdrnevich
closed
4 years ago
1
install_github("montilab/hypeR") missing hypdat.rds and vignette .html missing packages
#22
jdrnevich
closed
3 years ago
3
Background setting
#21
matwgmkw
closed
3 years ago
5
Order in which hits are displayed with dot plot function
#20
ttz12
closed
3 years ago
1
Cannot download genesets (have tried solutions from previous issues)
#19
ttz12
closed
4 years ago
2
Some suggestions
#18
Henkej77
closed
2 years ago
3
Cannot download genesets
#17
ahussain01
closed
4 years ago
2
Can I save interactive hyp_emap and keep its features?
#16
manostz
closed
4 years ago
1
Issue fetching rgsets - GitHub API error (404)
#15
manostz
closed
4 years ago
2
Update latest release
#14
anfederico
closed
4 years ago
0
msigdb_gsets doesn't give me all the CP gene sets
#13
gungorbudak
closed
4 years ago
2
Run enrichment on gene sets below some size and above some percentage
#12
gungorbudak
closed
4 years ago
1
Cannot fetch help through RStudio
#11
gungorbudak
closed
4 years ago
4
Can't get MSigDB
#10
Mphi-s
closed
4 years ago
3
Dots plot log-normalized x-axis to show unnormalized values as labels
#9
anfederico
closed
5 years ago
0
Enrichment tables should report background and signature size
#8
tetomonti
closed
4 years ago
3
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