mooreryan lsa_for_genomes issues

mooreryan / lsa_for_genomes

Latent semantic analysis pipeline for genomes and metagenomes

MIT License

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issues

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New version of MMseqs2 doesn't have cascaded option.

#19 mooreryan opened 6 years ago
1
Potential parsing error from mapping file

#18 seanmcallister opened 6 years ago
0
New post-analysis program for visualization of terms

#17 seanmcallister opened 6 years ago
0
term_doc_dists_plot

#16 seanmcallister closed 6 years ago
1
Color maps

#15 seanmcallister opened 7 years ago
1
Allow zero weights for singletons

#14 mooreryan opened 7 years ago
0
top_terms_by_doc.txt file is rather large; suggest gzipping

#13 seanmcallister opened 7 years ago
0
Headers on outfiles

#12 seanmcallister opened 7 years ago
0
Some of the plots are pdfs and some are pngs

#11 mooreryan opened 7 years ago
0
Color maps directory empty

#10 seanmcallister closed 7 years ago
1
Per topic heatmaps aren't created without mapping file

#9 seanmcallister opened 7 years ago
0
Topic 0 offset

#8 seanmcallister closed 7 years ago
1
"Grepping seq ids" step fails – Too many open files

#7 seanmcallister opened 7 years ago
5
Singleton cannot be 0

#6 seanmcallister closed 7 years ago
2
gplots dependency

#5 seanmcallister closed 6 years ago
1
Python

#4 seanmcallister closed 6 years ago
1
term_doc_dists_kmeans.r script has the same name for each genome

#3 mooreryan closed 7 years ago
1
Description of mapping file would be useful in the readme

#2 seanmcallister closed 6 years ago
1
Windows style return chars break mga2fasta.pl

#1 mooreryan closed 7 years ago
1