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mortazavilab
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PyWGCNA
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btad415/7218311
MIT License
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hub genes will be used instead of principal components error?
#56
QUEST2179
closed
11 months ago
5
how to make age a continuous parameter?
#55
kunalkathuria
closed
11 months ago
4
Error in findModules()
#54
Reese-Martin
closed
11 months ago
3
AttributeError: 'NoneType' object has no attribute 'render'
#53
mksingh2104
closed
11 months ago
6
index out of bounds error
#52
kunalkathuria
closed
11 months ago
2
"unsigned" option not working
#51
hamiltonoh
closed
11 months ago
1
server error in getting gene list
#50
kunalkathuria
closed
1 year ago
4
Error with findModules()
#49
FeedFall8
closed
1 year ago
7
Error with function analyseWGCNA()
#48
GERMAN00VP
opened
1 year ago
3
'WGCNA' object has no attribute 'top_n_hub_genes'
#47
jiansongatnih
closed
1 year ago
2
Error appearance in PyWGCNA (version 1.2.4) in Google colaboratory
#46
YoshifumiMiyagi
opened
1 year ago
6
pyWGCNA.findModules()—— sys.exit("Error!")
#45
anna4kaa
closed
1 year ago
2
single cell data?
#44
kunalkathuria
closed
1 year ago
2
local variable 'merge' referenced before assignment
#43
zEpoch
closed
10 months ago
7
When TOMtype is set to unsigned, an unexpected error will be triggered.
#42
liuzj039
closed
1 year ago
1
Error in analyseWGCNA()---color
#41
ZivTQ
closed
1 year ago
5
Could PyWGCNA draw Hierarchical cluster tree?
#40
ZivTQ
closed
1 year ago
1
pyWGCNA.findModules()—— sys.exit("Error!")
#39
ZivTQ
closed
1 year ago
9
cannot preprocess / manipulate Anndata object
#38
milanborchert
closed
1 year ago
3
AttributeError: 'WGCNA' object has no attribute 'top_n_hub_genes'
#37
anna4kaa
closed
1 year ago
3
principal component calculation for module black failed with the following error:
#36
mgb217
closed
1 year ago
2
ValueError: Linkage 'Z' contains negative distances
#35
mgb217
closed
1 year ago
3
barplotModuleEigenGene
#34
wangjiawen2013
closed
1 year ago
5
analyseWGCNA() improvement
#33
wangjiawen2013
closed
1 year ago
6
module number
#32
wangjiawen2013
closed
1 year ago
1
zero variance
#31
wangjiawen2013
closed
1 year ago
5
moduleEigengenes function error, failure to use hubgenes
#30
pelmatt
closed
1 year ago
3
getModulenames
#29
wangjiawen2013
closed
1 year ago
1
AttributeError when running
#28
FelipeMelis
closed
1 year ago
2
x and y ticks
#27
wangjiawen2013
opened
1 year ago
1
help documentation of WGCNA
#26
wangjiawen2013
closed
1 year ago
1
high resolution PyWGCNA_overview.png
#25
wangjiawen2013
closed
1 year ago
2
pyWGCNA maintenance
#24
wangjiawen2013
closed
1 year ago
1
setuptools >=66 causing error on pip install; package naming convention ('0.23ubuntu1') must be changed
#23
thirtysix
closed
1 year ago
1
Errors:IndexError: positional indexers are out-of-bounds
#22
vvvcgx
closed
1 year ago
5
Error in pyWGCNA dependences
#21
lmigueel
closed
1 year ago
3
Import issue on Windows with ModuleNotFoundError: No module named 'resource'
#20
MysoreSparrow
closed
1 year ago
3
Questions about one error in the analysis process
#19
HelloWorldLTY
closed
1 year ago
10
KeyError: "gene_id" in running " Comparing two PyWGCNA objects"
#18
tyaoi
closed
1 year ago
5
TypeError in analyseWGCNA
#17
RayRay-23
closed
1 year ago
8
Error in .findModules()
#16
alberto-mora
closed
1 year ago
6
TypeError: enrichr() got an unexpected keyword argument 'description'
#15
tyaoi
closed
1 year ago
4
I can't follow the tutorial
#14
alberto-mora
closed
1 year ago
3
Error in `preprocess()` when loading from anndata
#13
simonmfr
closed
1 year ago
5
PyWGCNA.getGeneList not working
#12
rachelzeng98
closed
1 year ago
0
fixing 0 vs 1 indexing error in findModules; remove empty description arg for enrichr
#11
annashch-insitro
closed
1 year ago
4
refactor + image format option + robust corr
#10
tariks
closed
1 year ago
0
Module Colors
#9
nmank
closed
1 year ago
1
outputPath does not work
#8
DJSiddharthVader
closed
1 year ago
1
Integer Gene Labels with geneExp.py
#7
nmank
closed
1 year ago
1
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