motiwari BanditPAM issues

motiwari / BanditPAM

BanditPAM C++ implementation and Python package

MIT License

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issues

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Make global variable explicit and add optional argument for algorithm

#122 mailology closed 3 years ago
0
Fix Cmake build linker issue

#121 mailology closed 2 years ago
0
Fix Cmake build

#120 motiwari closed 2 years ago
2
Multiple fixes

#119 motiwari closed 3 years ago
0
Create headers for each `.cpp` file in `src`

#118 motiwari closed 3 years ago
0
Run a linter/fix style

#117 motiwari closed 3 years ago
0
Don't modify `sigma` inplace, instead return new values

#116 motiwari closed 3 years ago
0
Can we use a newer manylinux image, e.g. manylinux2014?

#115 motiwari opened 3 years ago
0
Can we remove `Catch2` from `carma?

#114 motiwari closed 3 years ago
1
Give informative error message if no file is passed. Fixes #85

#113 mailology closed 3 years ago
0
Implement FastPAM1. Fixes #106

#112 mailology closed 3 years ago
2
Updating the `Dockerfile` to fix the error in `env_setup.sh` execution

#111 dhaval737 closed 3 years ago
0
Remove use of global in `KMedoids::fit`

#110 motiwari opened 3 years ago
1
Make `buildconfidence` and `swapConfidence` settable

#109 mailology closed 3 years ago
0
Remove headers pybind11 submodule

#108 mailology closed 3 years ago
0
Resolve conflicts in restructuring the script. Fixes #22

#107 mailology closed 3 years ago
1
Implement FastPAM1, and cite PAM and FastPAM papers

#106 motiwari closed 3 years ago
0
Restructure the scripts by separating algorithms from the driver

#105 mailology closed 3 years ago
1
Updated the cpp code to catch the ctrl_c interruption. Fix for issue #21.

#104 dhaval737 closed 3 years ago
1
Delete extraneous branches

#103 motiwari closed 3 years ago
0
Modifying `setup.py` to be specific to OSX, Ubuntu, and other Linux distros

#102 motiwari closed 3 years ago
0
Upload wheels for macOS to PyPI so users don't have to compile it themselves

#101 motiwari closed 2 years ago
0
Investigate `cibuildwheel` for building across all platforms

#100 motiwari closed 2 years ago
0
Need to use compiler-specific flags in `setup.py`

#99 motiwari opened 3 years ago
0
Ensure we are using the Accelerate framework on macOS

#98 motiwari closed 2 years ago
1
Remove debug symbols when package is compiled

#97 motiwari closed 3 years ago
1
Allow C++20 in compiler flags

#96 motiwari opened 3 years ago
0
Updating scripts to avoid re-running things that don't need to be re-run. Fix for issue #13

#95 dhaval737 closed 3 years ago
0
Changing all the instances of kmeds/KMeds to kmedoids/KMedoids. Fix for issue #42

#94 dhaval737 closed 3 years ago
2
Avoiding ```env_setup.sh``` to re-run things that don't need to be re-run. Fixes for issue #13

#93 dhaval737 closed 3 years ago
1
Compile all linux wheels with `clang`

#92 motiwari opened 3 years ago
0
Make `buildConfidence` and `swapConfidence` settable from Python

#91 motiwari closed 3 years ago
0
Identify further optimizations using Cython, Numba, etc.

#90 motiwari closed 2 years ago
2
Segfaults when using numpy.loadtxt

#89 motiwari closed 2 years ago
0
Modify naive algorithm to PAM. Fixes #1

#88 mailology closed 3 years ago
1
Do we actually need `matplotlib` and `pandas` in `requirements.txt`?

#87 motiwari closed 3 years ago
2
Make carma installation automatic

#86 motiwari opened 3 years ago
0
Make a more informative error if no file is passed / file not found

#85 motiwari closed 3 years ago
0
Standardize `-stdlib=libc++` versus `-stdlib=libstdc++`

#84 motiwari opened 3 years ago
0
Note: `setuptools` will always, at least partly, use the compiler that Python was compiled with

#83 motiwari closed 2 years ago
1
Verify that `clang`-compiled BanditPAM runs on `gcc`-compiled Python

#82 motiwari closed 2 years ago
1
Don't compile the package with the `-g` flag

#81 motiwari opened 3 years ago
0
Need to ensure numpy is installed before `carma` installation

#80 motiwari closed 2 years ago
1
`install_check_mac` should check for recent version of llvm

#79 motiwari closed 2 years ago
0
`kmed.fit` should also allow number of medoids to be passed

#78 motiwari closed 3 years ago
2
Python build

#77 motiwari closed 3 years ago
0
fix for Issue #42 after main rebase

#76 dhaval737 closed 3 years ago
0
Separate implementation from module schema in `kmeds_pywrapper.cpp`

#75 motiwari closed 3 years ago
0
Two `pybind11` submodules

#74 motiwari closed 3 years ago
0
Performance degradation for `k = 10`

#73 motiwari closed 3 years ago
1

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