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mroosmalen
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nanosv
SV caller for nanopore data
MIT License
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Compatibility with bed file is provided that contains 1,000,000 random positions on the hg19/GRCh37 human genome reference ?
#80
ElisouG
opened
1 month ago
1
NanoSV doesn't play nicely with guppy BAM file output
#79
adbeggs
opened
1 year ago
3
Creating BED file problems
#78
martika1997
closed
1 year ago
0
multithread not quite working
#77
xiaoyunguo
opened
2 years ago
0
Can nanoSV take both short and long reads?
#76
hbadrane
opened
3 years ago
0
Phasing mode not working
#75
yekaizhou
opened
3 years ago
0
what is an appropriate bed file?
#74
yekaizhou
closed
2 years ago
3
Sambamba is a dependency, but isn't listed as such in the conda package
#73
oneillkza
opened
3 years ago
0
ZeroDivisionError: float division by zero from NanoSV version 1.2.4
#72
fraser518
opened
3 years ago
0
Why 1M lines in the bed file?
#71
utrivedi
opened
3 years ago
0
Incorrect output + Slow VCF writing
#70
GuillaumeHolley
opened
4 years ago
0
DR and DV fields on VCF
#69
dangeles
closed
4 years ago
0
.bed and .init files are executable
#68
smoe
opened
4 years ago
0
setup.py: README.fst -> README.md
#67
smoe
opened
4 years ago
0
Please tag releases
#66
smoe
opened
4 years ago
0
conda installation is not working ?
#65
ptranvan
opened
4 years ago
1
What is the human_hg19.bed file looks like?
#64
ChaoTang-SCU
closed
4 years ago
1
Output with breakends
#63
zahrahaider
closed
4 years ago
0
Busy with printing to vcf...
#62
ndierckx
opened
4 years ago
5
NanoSV with truvari
#61
Tintest
opened
4 years ago
3
cannot call NanoSV after installing with conda
#60
BCArg
closed
4 years ago
2
NanoSV is not working
#59
amrita1983
opened
4 years ago
1
Conda install nanosv 1.2.4
#58
max1c
closed
4 years ago
9
NanoSV takes too long parsing BAM file in plant genome
#57
Biometeor
closed
4 years ago
8
Dev
#56
mroosmalen
closed
5 years ago
0
Output reads supporting events?
#55
mattdmem
closed
5 years ago
0
VCF Filters
#54
mpabloperez
closed
5 years ago
1
Update create_random_position_bed.sh
#53
jaesvi
closed
5 years ago
0
NanoSV takes too long parsing BAM file
#52
fanavarro
closed
5 years ago
7
Fixed some minor bugs in scripts/create_random_position_bed.py
#51
mroosmalen
closed
6 years ago
0
Dev
#50
mroosmalen
closed
6 years ago
0
Provided Bedfile is not hg19 coordinate
#49
zhouanbo
closed
5 years ago
10
ID and MATEID
#48
tgong1
closed
4 years ago
1
Error while trying to call snps " UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 948: ordinal not in range(128)"
#47
herrroaa
closed
4 years ago
20
RF filtering model availability
#46
MaestSi
closed
6 years ago
2
pip install nanosv: UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 1112: ordinal not in range(128)
#45
philres
closed
6 years ago
5
Genotype information: format field in VCF
#44
tgong1
closed
6 years ago
2
Can't calculate coverage distribution.
#43
OxPen
closed
6 years ago
8
new release v1.2.0
#42
mroosmalen
closed
6 years ago
0
Update config.ini
#41
jaesvi
closed
6 years ago
0
Update README.md
#40
jaesvi
closed
6 years ago
0
Dev
#39
jaesvi
closed
6 years ago
0
Wkloosterman patch 1
#38
wkloosterman
closed
6 years ago
0
Wkloosterman patch 1
#37
wkloosterman
closed
6 years ago
0
New
#36
mroosmalen
closed
6 years ago
0
New
#35
mroosmalen
closed
6 years ago
0
BND and other SVtypes
#34
wdecoster
closed
6 years ago
4
SV type inference and coverage depth
#33
tgong1
closed
6 years ago
4
error of last-train
#32
HuJane
closed
6 years ago
3
Got exception of object has no attribute 'infer_read_length' when running with BAM file by minimap2 with nanopore fastq files
#31
mullinyu
closed
6 years ago
2
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