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ms609
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TreeDist
Calculate distances between phylogenetic trees in R
https://ms609.github.io/TreeDist/
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txc extremely low with MDS and still low with tsne
#127
aguang
opened
1 week ago
4
Islands vignette
#126
ms609
opened
2 weeks ago
0
Control over `VisualizeMatching()`
#125
ms609
closed
1 week ago
1
Plotting large (400 taxa) trees with VisualizeMatching
#124
ammaraziz
closed
1 week ago
5
Memory Leak and Output Stalling when Processing Large Datasets with TreeDistance()
#123
qwer62667771
opened
1 month ago
5
Other tree distances to discuss / incorporate
#122
ms609
opened
2 months ago
0
Islands()
#121
ms609
closed
2 months ago
1
Native SPR dist implementation
#120
ms609
closed
2 months ago
1
Memcheck2
#119
SermetPekin
closed
2 months ago
1
Fix Dependency Resolution Issues, Enhance Compatibility Checks, and Add Dockerfile
#118
SermetPekin
closed
2 months ago
1
The definition of RobinsonFoulds()
#117
Cassie818
closed
3 months ago
2
using a benchmark tree correctly with distance functions
#116
jc17659
closed
3 weeks ago
3
Rhub.yaml
#115
ms609
closed
6 months ago
0
KCDiameter.multiPhylo()
#114
ms609
closed
6 months ago
0
ms609/actions/revdepcheck
#113
ms609
closed
6 months ago
0
rm 534 workaround
#112
ms609
closed
6 months ago
1
Information-theoretic approaches to consensus trees
#111
ms609
opened
6 months ago
0
Island hunting (Silva & Wilkinson 2021)
#110
ms609
closed
2 months ago
0
Strain calculation & display
#109
ms609
closed
11 months ago
1
GHA run for more-leaves branch
#108
ms609
opened
11 months ago
0
`VisualizeMatching()` with unrooted trees
#107
ms609
closed
1 year ago
1
Warn when tips don't match?
#106
ms609
opened
1 year ago
0
LAPJV
#105
ms609
closed
1 year ago
0
Support non-square matrices
#104
ms609
closed
1 year ago
0
Error with `VisualizeMatching`
#103
Sidduppal
closed
1 year ago
4
The Treedist distance matrix output of Generalized RF and Nye et al. methods are zero
#102
Jigyasa3
closed
1 year ago
3
mem-check from template
#101
ms609
opened
1 year ago
1
`MapTrees()` caching
#100
ms609
closed
1 year ago
2
thinnedTrees() with multiple tree batches
#99
ms609
opened
1 year ago
0
MapTrees() with multiple batches
#98
ms609
closed
1 year ago
0
When no. of tips in species tree and gene tree dont match. Adding new tips to the species tree
#97
Jigyasa3
closed
1 year ago
2
Adapt for weighted trees
#96
ms609
opened
1 year ago
0
Check for clustering with Hopkins statistic
#95
ms609
closed
3 weeks ago
1
polytomies allowed in the genetree?
#94
Jigyasa3
closed
1 year ago
1
Compare trees with different tips
#93
ms609
closed
1 year ago
2
Comparing trees with non-identical tips
#92
roblanf
closed
1 year ago
4
Upgrade to K-means++
#91
ms609
closed
1 year ago
2
Landscape vignette
#90
ms609
closed
2 years ago
0
Misc improvements
#89
ms609
closed
2 years ago
0
SPR project
#88
ms609
opened
2 years ago
0
Pathtrees
#87
ms609
opened
2 years ago
0
VisualizeMatching
#86
rforster1
closed
11 months ago
1
Replace projection warning?
#85
ms609
closed
2 years ago
0
Use SIMD to improve performance (?)
#84
ms609
opened
2 years ago
0
Dimension goodness plotter fails with batches
#83
ms609
opened
2 years ago
0
input tree one by one?
#82
ghost
closed
2 years ago
2
Suggestion: how to compare tree with subsampled trees, thanks
#81
ghost
closed
2 years ago
2
where is your shiny app for treedist?
#80
liamxg
closed
2 years ago
2
Testing branch
#78
ms609
closed
2 years ago
1
v2.4.0
#77
ms609
closed
2 years ago
0
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