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ms609
/
TreeDist
Calculate distances between phylogenetic trees in R
https://ms609.github.io/TreeDist/
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Rcpp/Lightest
#72
ms609
closed
2 years ago
1
Use lighter Rcpp?
#71
ms609
closed
2 years ago
0
Acknowledge another Generalized RF distance
#70
ms609
opened
2 years ago
0
Support p > 0.5 in `ConsensusInfo()`
#69
ms609
closed
2 years ago
1
Visualize MST stress
#68
ms609
closed
2 years ago
0
Hypervolume comparison in app
#67
ms609
opened
2 years ago
0
v2.2.0
#66
ms609
closed
2 years ago
1
Calculating adjusted R2 values from ClusteringInfoDistance() after randomization?
#65
Jigyasa3
closed
9 months ago
2
SplitList.h → TreeTools
#64
ms609
closed
2 years ago
1
ClusterTable → TreeTools
#63
ms609
closed
2 years ago
0
suppressMessages
#62
ms609
closed
2 years ago
1
Parallelize
#61
ms609
closed
2 years ago
1
testthat edition 3
#60
ms609
closed
2 years ago
1
Optimize multi-tree comparisons
#59
ms609
opened
3 years ago
1
Rooted trees or unrooted trees?
#58
Jigyasa3
closed
3 years ago
4
Internalize multi-tree comparisons in C++
#57
ms609
opened
3 years ago
0
Optimize
#56
ms609
closed
3 years ago
1
v2.1.0 release
#55
ms609
closed
3 years ago
1
ConsensusInfo()
#54
ms609
closed
3 years ago
1
`Plot3` documentation
#53
ms609
closed
1 year ago
0
Support _p_ in `SplitwiseInfo()`
#52
ms609
closed
3 years ago
1
Add SSV metric to `MapTrees()`
#51
ms609
opened
3 years ago
0
MapTrees() updates
#50
ms609
opened
3 years ago
0
Unrooted alternative to K-C
#49
ms609
closed
3 years ago
1
Kendall-Colijn formatting
#48
ms609
closed
3 years ago
1
Check for duplicate edges in trees when comparing
#47
ms609
opened
3 years ago
0
protoclust required for vignette
#46
ms609
closed
3 years ago
0
Create R-CMD-check.yml
#45
ms609
closed
3 years ago
1
Trees with different leaves:
#44
cdp-rna
closed
9 months ago
15
Accelerate RF & CID calculation
#43
ms609
closed
3 years ago
1
Treespace references
#42
ms609
closed
3 years ago
0
Fix merge conflict errors
#41
ms609
closed
3 years ago
0
Fix merge errors
#40
ms609
closed
3 years ago
0
Improve Shiny app
#39
ms609
closed
3 years ago
0
Treespace
#38
ms609
closed
3 years ago
0
Faster RF with multiple trees
#37
ms609
opened
3 years ago
0
Match identical splits first
#36
ms609
closed
3 years ago
1
v1.2.0
#35
ms609
closed
3 years ago
1
Tweaks & clarifications
#34
ms609
closed
3 years ago
0
Reduce LAP comparison precision
#33
ms609
closed
3 years ago
0
Increase value of epsilon in nontrivially_less_than to avoid interminable loop
#32
ms609
closed
3 years ago
1
NNI & CID improvements
#31
ms609
closed
3 years ago
0
Precision: initial tidying
#30
ms609
closed
3 years ago
0
1.1.1.9000: Matrices as `dist` objects
#29
ms609
closed
3 years ago
1
Improve `NNIDist()`
#28
ms609
closed
4 years ago
1
Arboreal matchings not tested
#27
ms609
closed
4 years ago
0
Restore vdiffr tests
#26
ms609
closed
4 years ago
0
LAPJV with non-square matrices
#25
ms609
closed
1 year ago
0
Unrooted NNI comparisons
#24
ms609
closed
4 years ago
0
Use int_fast16_t
#23
ms609
closed
4 years ago
1
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