mskcc-omics-workflows modules issues

mskcc-omics-workflows / modules

A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC

https://mskcc-omics-workflows.gitbook.io/omics-workflows

5 stars 3 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Update several neoantigen tools

#162 nikhil opened 3 days ago
0
Q1 Demo for Analysts

#161 buehlere opened 3 days ago
0
Code Owners

#160 buehlere opened 3 days ago
0
Release and Fix Lint

#159 buehlere opened 3 days ago
0
Update PULL_REQUEST_TEMPLATE.md

#158 nikhil opened 3 days ago
0
big lint fix

#157 buehlere opened 2 weeks ago
0
Release/0.1.2

#156 buehlere opened 2 weeks ago
0
MiMSI module

#155 huyu335 opened 2 weeks ago
0
Gitbook Table of Contents

#154 buehlere opened 2 weeks ago
0
MuTect2 Module

#153 rnaidu opened 2 weeks ago
0
Temp

#152 huyu335 closed 1 month ago
0
Update test.yml specifically verify markdown part with new schema associated with modules

#151 rhshah closed 2 weeks ago
3
Adding AGPL license

#150 rhshah closed 2 weeks ago
0
updated traceback subworkflow and associated modules with changes for…

#149 rnaidu closed 4 days ago
1
Allow num_chains to be set in the config

#148 nikhil closed 3 days ago
1
Add more documentation of flow from module -> subworkflow -> pipeline

#147 buehlere opened 1 month ago
0
Schedule Cross Group Meeting

#146 buehlere opened 1 month ago
1
updating traceback subworkflow with local changes made to pass nf-cor…

#145 rnaidu closed 2 months ago
0
Mutect1 lint update

#144 rnaidu closed 2 months ago
0
Remove 'name' field as mandatory from environment_schema.json

#143 rnaidu closed 2 months ago
2
Will need to update environment_schema.json to make 'name' field not mandatory

#142 rnaidu opened 2 months ago
1
Updating Genome Nexus Subworkflow + Modules (for nucleovar nf-core lint check)

#141 rnaidu closed 2 months ago
0
INACTIVE

#140 rnaidu closed 2 months ago
0
(INACTIVE)

#139 rnaidu closed 2 months ago
0
Module Documentation Re-organization

#138 buehlere opened 2 months ago
0
Add License file

#137 rhshah opened 2 months ago
0
Hotfix for gitbook sync

#136 huyu335 closed 2 months ago
0
Add git pull before commit

#135 huyu335 closed 2 months ago
0
hotfix for documentation

#134 buehlere closed 2 months ago
0
Modules failed in update_summary.py

#133 buehlere closed 2 months ago
0
Fix auto linting issue

#132 huyu335 closed 2 months ago
0
Update test bam locations

#131 huyu335 closed 2 months ago
0
Release/0.1.1

#130 buehlere closed 2 months ago
0
test

#129 buehlere closed 2 months ago
0
fixing PR template

#128 buehlere closed 2 months ago
0
Fix PR template

#127 buehlere opened 3 months ago
0
IGV Screenshot Module

#126 buehlere opened 3 months ago
0
IGV Snapshot module

#125 buehlere opened 3 months ago
0
Feature/neosv

#124 johnoooh closed 2 months ago
0
Fix stub test for formatnetmhcpan

#123 nikhil closed 3 months ago
0
update genotype_variants image

#122 buehlere opened 3 months ago
0
Update java vm args

#121 nikhil closed 3 months ago
0
hard coded versions should use tags

#120 buehlere opened 3 months ago
0
meta-data consistency

#119 buehlere opened 3 months ago
0
changed versioning of annotation pipeline module in genome nexus subw…

#118 rnaidu closed 3 months ago
0
Feature/neo tsv

#117 johnoooh closed 3 months ago
1
Bedtools subworkflow (containing bedtools genomecov and bedtools merge modules)

#116 rnaidu closed 3 months ago
1
Small fixes for rediscoverte

#115 nikhil closed 3 months ago
0
Feature/vcf2maf

#114 rnaidu closed 3 months ago
0
Add MSK Module Containers to Container Repo

#113 buehlere opened 4 months ago
0