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mskcc-omics-workflows
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modules
A repository for hosting Nextflow DSL2 module files containing tool-specific process definitions and their associated documentation for MSKCC
https://mskcc-omics-workflows.gitbook.io/omics-workflows
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Temp
#152
huyu335
closed
3 days ago
0
Update test.yml specifically verify markdown part with new schema associated with modules
#151
rhshah
opened
3 days ago
3
Adding AGPL license
#150
rhshah
opened
3 days ago
0
updated traceback subworkflow and associated modules with changes for…
#149
rnaidu
opened
6 days ago
1
Allow num_chains to be set in the config
#148
nikhil
opened
1 week ago
1
Add more documentation of flow from module -> subworkflow -> pipeline
#147
buehlere
opened
1 week ago
0
Schedule Cross Group Meeting
#146
buehlere
opened
2 weeks ago
1
updating traceback subworkflow with local changes made to pass nf-cor…
#145
rnaidu
closed
3 weeks ago
0
Mutect1 lint update
#144
rnaidu
closed
3 weeks ago
0
Remove 'name' field as mandatory from environment_schema.json
#143
rnaidu
closed
4 weeks ago
2
Will need to update environment_schema.json to make 'name' field not mandatory
#142
rnaidu
opened
1 month ago
1
Updating Genome Nexus Subworkflow + Modules (for nucleovar nf-core lint check)
#141
rnaidu
closed
4 weeks ago
0
INACTIVE
#140
rnaidu
closed
1 month ago
0
(INACTIVE)
#139
rnaidu
closed
1 month ago
0
Module Documentation Re-organization
#138
buehlere
opened
1 month ago
0
Add License file
#137
rhshah
opened
1 month ago
0
Hotfix for gitbook sync
#136
huyu335
closed
1 month ago
0
Add git pull before commit
#135
huyu335
closed
1 month ago
0
hotfix for documentation
#134
buehlere
closed
1 month ago
0
Modules failed in update_summary.py
#133
buehlere
closed
1 month ago
0
Fix auto linting issue
#132
huyu335
closed
1 month ago
0
Update test bam locations
#131
huyu335
closed
1 month ago
0
Release/0.1.1
#130
buehlere
closed
1 month ago
0
test
#129
buehlere
closed
1 month ago
0
fixing PR template
#128
buehlere
closed
1 month ago
0
Fix PR template
#127
buehlere
opened
1 month ago
0
IGV Screenshot Module
#126
buehlere
opened
2 months ago
0
IGV Snapshot module
#125
buehlere
opened
2 months ago
0
Feature/neosv
#124
johnoooh
closed
1 month ago
0
Fix stub test for formatnetmhcpan
#123
nikhil
closed
2 months ago
0
update genotype_variants image
#122
buehlere
opened
2 months ago
0
Update java vm args
#121
nikhil
closed
2 months ago
0
hard coded versions should use tags
#120
buehlere
opened
2 months ago
0
meta-data consistency
#119
buehlere
opened
2 months ago
0
changed versioning of annotation pipeline module in genome nexus subw…
#118
rnaidu
closed
2 months ago
0
Feature/neo tsv
#117
johnoooh
closed
2 months ago
1
Bedtools subworkflow (containing bedtools genomecov and bedtools merge modules)
#116
rnaidu
closed
2 months ago
1
Small fixes for rediscoverte
#115
nikhil
closed
2 months ago
0
Feature/vcf2maf
#114
rnaidu
closed
2 months ago
0
Add MSK Module Containers to Container Repo
#113
buehlere
opened
2 months ago
0
Organization Usage Issues
#112
buehlere
opened
2 months ago
0
Add Org Admins
#111
buehlere
opened
2 months ago
0
Feature/add neoantigen modules
#110
nikhil
closed
2 months ago
1
Feature/add neoantigen modules
#109
nikhil
closed
3 months ago
0
Fix cellularity logic for facets input
#108
nikhil
closed
3 months ago
0
Renamed data folder as data is in other gitignores
#107
nikhil
closed
3 months ago
0
Update tags
#106
nikhil
closed
3 months ago
0
Set phylowgs chains to thread count
#105
nikhil
closed
3 months ago
0
Feature/indel assigning
#104
johnoooh
closed
3 months ago
0
Feature/add rediscoverte
#103
nikhil
closed
3 months ago
0
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