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msraredon
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NICHES
Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
https://msraredon.github.io/NICHES/
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Subset of Seurat object
#47
mvereten
opened
3 days ago
0
Local microenvironment specificity
#46
JessicaChevallier
opened
1 week ago
1
Dev master
#45
jcyang34
closed
1 week ago
0
SpatialDimPlot not showing spots
#44
Kennyluo4
closed
3 weeks ago
1
Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double)
#43
ayusyarif
opened
1 month ago
4
Error in validObject(object = object) : invalid class “Assay5” object: Layers must be two-dimensional objects
#42
pushpinder-bu
opened
1 month ago
0
Error in `$<-.data.frame`(`*tmp*`, "x", value = character(0))
#41
annaminyifeng
closed
2 months ago
1
bug fix for existing issues
#40
jcyang34
closed
1 week ago
2
Efficient k neighborhood calculations
#39
aaron-oz
closed
3 months ago
1
remove "sys small" notation and replace with "object" or similar
#38
RaredonLab
closed
1 week ago
0
Running NICHES on large spatial datasets
#37
RaredonLab
opened
3 months ago
2
getSeuratAssay function gives an error
#36
madhavmantri
closed
3 months ago
5
Function RunNICHES does not work for one-cell case
#35
noahwang1991
closed
1 week ago
2
Error: No cell overlap between new meta data and Seurat object
#34
suerle
closed
1 week ago
1
updated DESCRIPTION and NAMESPACE
#33
jcyang34
closed
7 months ago
0
update version info in DESCRIPTION
#32
jcyang34
closed
7 months ago
0
Updated NICHES to be compatible with Seurat V5
#30
jcyang34
closed
7 months ago
0
Default map all metadata
#29
RaredonLab
closed
7 months ago
1
Metadata mapping does not occur properly with Seurat v5 objects
#28
RaredonLab
closed
8 months ago
1
CellToSystem and SystemToCell metadata handling is not compatible with Seurat v5
#27
RaredonLab
closed
7 months ago
1
Compatibility with Seurat V5
#24
jcyang34
closed
7 months ago
0
NeighborhoodToCell metadata fix: add prefix
#23
jcyang34
closed
11 months ago
0
systemToCell metadata fix: add prefix
#22
jcyang34
closed
11 months ago
0
memory leak for single-cell resolution spatial edgelist construction
#21
paularstrpo
opened
12 months ago
1
Dev master
#20
jcyang34
closed
1 year ago
0
Error: No cell overlap between new meta data and Seurat object
#18
joachimsiaw
closed
1 year ago
1
NICHES for spatial transcriptomic data
#17
chrkuo
closed
1 year ago
4
Number of space transcriptome samples
#15
maqingyue
closed
1 year ago
6
question about result meaning?
#10
jinyuanchun
closed
1 year ago
1
the " SpatialDimPlot()" is picture have a problem?---Spatial Data
#9
jinyuanchun
closed
2 years ago
4
i first install niches in R followed by document
#8
jinyuanchun
closed
2 years ago
1
Setting DefaultAssay to class Function
#7
wes-lewis
closed
2 years ago
0
Analyzing scRNA-seq data with multiple treatment groups
#6
scas224
closed
2 years ago
3
How to draw the heatmap blow using code in Vignette '01 NICHES Spatial.Rmd'
#5
Luosanj
closed
2 years ago
1
Trying to install `NICHE` in a fresh `renv 0.15.4` within `R/4.1.0` fails:
#4
mkyriak
closed
2 years ago
1
omnipath_download() failed
#3
bhavyaac
closed
2 years ago
2
Normalization, rad.set, scripts
#2
mhoang22
closed
2 years ago
6
reference for installation path wrong
#1
Ehaxe
closed
2 years ago
1