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muellan
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metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
GNU General Public License v3.0
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Provide memory mapping option?
#43
ChillarAnand
opened
1 week ago
1
Issues with partitioned DB and merging
#42
jaimeortiz-david
opened
1 month ago
0
Segmentation fault (core dump) issue on custom DB
#41
donovan-parks
closed
4 months ago
2
Using DB partition and MERGE does not match single DB abundance results
#40
jaimeortiz-david
opened
5 months ago
0
Scientific notation in abundance file result in rounding errors
#39
donovan-h-parks
opened
10 months ago
5
GPU version on bioconda
#38
fgvieira
closed
1 year ago
3
Guidance for working with large reference data sets
#37
ohickl
opened
1 year ago
6
Compiling with uint64_t
#36
ohickl
closed
1 year ago
5
Unranked targets when building custom DB
#35
donovan-h-parks
opened
1 year ago
5
Make throws the Invalid Option error if multiple macros are passed
#34
banderoz
closed
1 year ago
1
Merging results from querying partitioned database
#33
jaimeortiz-david
closed
2 years ago
16
Building a custom DB
#32
donovan-parks
closed
2 years ago
2
Results Output Visualization
#31
punnettsun
closed
2 years ago
1
Database Build Files
#30
punnettsun
closed
2 years ago
2
Ion Xpress (Ion Torrent)
#29
jaimeortiz-david
opened
2 years ago
1
Segmentation fault when using --lowest species
#28
donovan-h-parks
opened
2 years ago
3
Segmentation fault (core dumped)
#27
jaimeortiz-david
closed
4 months ago
6
Interpreting abundance profile
#26
donovan-h-parks
closed
2 years ago
5
Report MetaCache version
#25
donovan-h-parks
closed
2 years ago
1
Problem building DB with metacache-build-refseq
#24
donovan-parks
closed
2 years ago
6
metacache-build-refseq gets killed at 46% every time i try to build the database
#23
clanzett
closed
2 years ago
2
Database load times highly and unexpectedly non-linear
#22
jdwinkler-lanzatech
closed
2 years ago
7
Using as a library
#21
anuradhawick
opened
3 years ago
1
Typo
#20
frederic-mahe
closed
3 years ago
1
AFS20 database construction
#19
TahaShahroodi
closed
3 years ago
4
long reads
#18
xgnusr
opened
3 years ago
4
Out file interpretation
#17
bielasilva
opened
3 years ago
2
Allow for more threads?
#16
punnettsun
closed
3 years ago
9
Classification abundances output not showing all ranks
#15
punnettsun
closed
3 years ago
4
Custom Database Creation
#14
punnettsun
closed
3 years ago
11
Strain Level Database
#13
punnettsun
closed
3 years ago
2
Support for gzipped reads
#12
donovan-h-parks
closed
3 years ago
12
Form and variety
#11
donovan-h-parks
closed
4 years ago
2
Interpretation of reported abundance table
#10
donovan-h-parks
closed
4 years ago
6
target limit: number of genomes or sequences?
#9
donovan-h-parks
closed
4 years ago
2
Segmentation fault
#8
alex-dem
closed
4 years ago
7
separator not properly handled in the output
#7
leoqiang
closed
4 years ago
5
metacache-build-refseq and download-ncbi-genomes not downloading genomes
#6
sturne29
closed
6 years ago
4
speedup refseq downloads - suggestion not issue
#5
accopeland
closed
6 years ago
3
error compiling metacache
#4
ghost
closed
6 years ago
5
Enhancement: Provide NCBI taxids in output
#3
sjaenick
closed
6 years ago
2
redirect progress messages to stderr
#2
sjaenick
closed
6 years ago
0
Argument handling
#1
sjaenick
closed
6 years ago
2