najoshi sickle issues - Githubissues

najoshi / sickle

Windowed Adaptive Trimming for fastq files using quality

MIT License

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issues

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Correct command question for trimming to a fixed length

#59 FaehlingT opened 1 year ago
0
sickle not found though installed.

#58 skr3178 opened 1 year ago
0
WARNING: PE file 2 is shorter than PE file 1

#57 vappiah opened 3 years ago
0
Using -g increases runtime

#56 PelFritz opened 3 years ago
0
questions about filtering out reads based on the first 3 bases quality in reads before adaptor trimming

#55 santataRU opened 4 years ago
0
Not an issue but questions

#54 FritzPeleke opened 4 years ago
2
No annotation for the options

#53 MiltonKoB opened 5 years ago
0
"Segmentation fault (core dumped)" depending on parameters naming

#52 rioualen opened 7 years ago
2
Fix off-by-one error finding 3' cutoff.

#51 MikkelSchubert opened 7 years ago
0
bioconda

#50 dridk opened 7 years ago
2
sickle pe makes unpaired output

#49 dcopetti closed 8 years ago
5
Develop

#48 dstreett closed 8 years ago
0
Quality Scores in illumina reads too low

#47 tobsecret opened 8 years ago
2
Citable DOI for repository via Zenodo

#46 jdblischak opened 8 years ago
0
Tabs

#45 dstreett closed 8 years ago
0
Rework Galaxy wrapper.

#44 nsoranzo opened 9 years ago
1
Use stderr for all logging messages

#43 kdm9 opened 9 years ago
2
Can't chose window size

#42 xapple opened 9 years ago
1
[4/4] -n / -N options: Only consider Ns between the sliding window cut sites (+ tests!)

#41 tsibley opened 9 years ago
0
[1/4] Option sync and usage cleanup

#40 tsibley opened 9 years ago
0
-n / -N options: Only consider Ns between the sliding window cut sites

#39 tsibley closed 9 years ago
1
Orphan quality and length thresholds

#38 jdidion opened 9 years ago
0
Different quality and length thresholds for paired-end and single-end reads

#37 jdidion opened 9 years ago
0
[3/4] Optionally use a fixed window size instead of 0.1 of the read length

#36 tsibley opened 9 years ago
4
[2/4] Add a --drop-n / -N option to drop any sequence containing an N

#35 tsibley opened 10 years ago
1
Option segfault and usage cleanup

#34 tsibley closed 9 years ago
1
testing / fixing issue 32

#33 wookietreiber opened 10 years ago
1
segfault on empty reads

#32 roryk opened 10 years ago
10
standard build using GNU autotools

#31 wookietreiber opened 10 years ago
2
Change behavior of -n option

#30 monicabritton closed 10 years ago
1
pull request for version 1.31

#29 ucdavis-bioinformatics closed 10 years ago
0
[WIP] implement a CLI option to output singles to same file as interleaved output

#28 kdm9 closed 10 years ago
5
Tuned sliding.c and added support for colorspace

#27 biocyberman closed 10 years ago
1
Merge pull request

#26 ucdavis-bioinformatics closed 10 years ago
0
Merge pull request #3 from najoshi/master

#25 ucdavis-bioinformatics closed 10 years ago
0
differerence in number of kept reads between with and without 5' trimming?

#24 biocyberman opened 10 years ago
2
Trimming colorspace reads

#23 biocyberman opened 10 years ago
1
Citation

#22 pedrocrisp closed 10 years ago
1
sickle_singletons_file

#21 cdmarsden closed 10 years ago
0
problem with length threshold

#20 boryanakis closed 10 years ago
4
pull request

#19 ucdavis-bioinformatics closed 11 years ago
0
pull request

#18 ucdavis-bioinformatics closed 11 years ago
0
pull request

#17 ucdavis-bioinformatics closed 11 years ago
0
Concerning libz

#16 nkav closed 11 years ago
4
Fix linker error: undefined reference to `gzread'

#15 sjackman closed 11 years ago
1
Fixes quality encoding for phred33 scores

#14 gedankenstuecke closed 11 years ago
1
phred33 quality scores

#13 fgvieira closed 11 years ago
6
Citation

#12 audy closed 11 years ago
2
Please add a git-tag for release versions, so homebrew can use that

#11 samueljohn closed 11 years ago
2
makefile

#10 nsaarman closed 11 years ago
5