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najoshi
/
sickle
Windowed Adaptive Trimming for fastq files using quality
MIT License
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Correct command question for trimming to a fixed length
#59
FaehlingT
opened
1 year ago
0
sickle not found though installed.
#58
skr3178
opened
1 year ago
0
WARNING: PE file 2 is shorter than PE file 1
#57
vappiah
opened
3 years ago
0
Using -g increases runtime
#56
PelFritz
opened
3 years ago
0
questions about filtering out reads based on the first 3 bases quality in reads before adaptor trimming
#55
santataRU
opened
4 years ago
0
Not an issue but questions
#54
FritzPeleke
opened
4 years ago
2
No annotation for the options
#53
MiltonKoB
opened
5 years ago
0
"Segmentation fault (core dumped)" depending on parameters naming
#52
rioualen
opened
7 years ago
2
Fix off-by-one error finding 3' cutoff.
#51
MikkelSchubert
opened
7 years ago
0
bioconda
#50
dridk
opened
7 years ago
2
sickle pe makes unpaired output
#49
dcopetti
closed
8 years ago
5
Develop
#48
dstreett
closed
8 years ago
0
Quality Scores in illumina reads too low
#47
tobsecret
opened
8 years ago
2
Citable DOI for repository via Zenodo
#46
jdblischak
opened
8 years ago
0
Tabs
#45
dstreett
closed
8 years ago
0
Rework Galaxy wrapper.
#44
nsoranzo
opened
9 years ago
1
Use stderr for all logging messages
#43
kdm9
opened
9 years ago
2
Can't chose window size
#42
xapple
opened
9 years ago
1
[4/4] -n / -N options: Only consider Ns between the sliding window cut sites (+ tests!)
#41
tsibley
opened
9 years ago
0
[1/4] Option sync and usage cleanup
#40
tsibley
opened
9 years ago
0
-n / -N options: Only consider Ns between the sliding window cut sites
#39
tsibley
closed
9 years ago
1
Orphan quality and length thresholds
#38
jdidion
opened
9 years ago
0
Different quality and length thresholds for paired-end and single-end reads
#37
jdidion
opened
9 years ago
0
[3/4] Optionally use a fixed window size instead of 0.1 of the read length
#36
tsibley
opened
9 years ago
4
[2/4] Add a --drop-n / -N option to drop any sequence containing an N
#35
tsibley
opened
10 years ago
1
Option segfault and usage cleanup
#34
tsibley
closed
9 years ago
1
testing / fixing issue 32
#33
wookietreiber
opened
10 years ago
1
segfault on empty reads
#32
roryk
opened
10 years ago
10
standard build using GNU autotools
#31
wookietreiber
opened
10 years ago
2
Change behavior of -n option
#30
monicabritton
closed
10 years ago
1
pull request for version 1.31
#29
ucdavis-bioinformatics
closed
10 years ago
0
[WIP] implement a CLI option to output singles to same file as interleaved output
#28
kdm9
closed
10 years ago
5
Tuned sliding.c and added support for colorspace
#27
biocyberman
closed
10 years ago
1
Merge pull request
#26
ucdavis-bioinformatics
closed
10 years ago
0
Merge pull request #3 from najoshi/master
#25
ucdavis-bioinformatics
closed
10 years ago
0
differerence in number of kept reads between with and without 5' trimming?
#24
biocyberman
opened
10 years ago
2
Trimming colorspace reads
#23
biocyberman
opened
10 years ago
1
Citation
#22
pedrocrisp
closed
10 years ago
1
sickle_singletons_file
#21
cdmarsden
closed
10 years ago
0
problem with length threshold
#20
boryanakis
closed
10 years ago
4
pull request
#19
ucdavis-bioinformatics
closed
11 years ago
0
pull request
#18
ucdavis-bioinformatics
closed
11 years ago
0
pull request
#17
ucdavis-bioinformatics
closed
11 years ago
0
Concerning libz
#16
nkav
closed
11 years ago
4
Fix linker error: undefined reference to `gzread'
#15
sjackman
closed
11 years ago
1
Fixes quality encoding for phred33 scores
#14
gedankenstuecke
closed
11 years ago
1
phred33 quality scores
#13
fgvieira
closed
11 years ago
6
Citation
#12
audy
closed
11 years ago
2
Please add a git-tag for release versions, so homebrew can use that
#11
samueljohn
closed
11 years ago
2
makefile
#10
nsaarman
closed
11 years ago
5
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