natverse elmr issues - Githubissues

natverse / elmr

Support for working with light and electron microscopy fly brain data

https://natverse.github.io/elmr

GNU General Public License v3.0

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issues

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Fix unspike: keep swc Label col, no dups

#55 jefferis closed 3 years ago
1
unspike appears to duplicate nodes

#54 jefferis closed 3 years ago
1
problem with unspike when only one tag

#53 jefferis closed 3 years ago
0
Cavities in FAFB14 template brain

#52 alexanderbates opened 4 years ago
5
FAFB template for different resolution

#51 albertplus007 closed 4 years ago
2
Updated for moving functionality to nat, please see: https://github.c…

#50 SridharJagannathan closed 4 years ago
7
Feature/simplify travis

#49 jefferis closed 4 years ago
0
Travis build fails due to timeout issue

#48 SridharJagannathan closed 4 years ago
4
simplify_neuron example should fetch neuron not landmark

#47 jefferis closed 4 years ago
1
Lineages in FAFB

#46 alexanderbates closed 4 years ago
3
Fix strange arrows in plot3d.ngraph

#45 jefferis closed 5 years ago
0
Allow open_fafb to use a catmaid connection to identify server

#44 jefferis closed 5 years ago
0
Can xform_brain return voxel values instead of coordinates when mapping from light microscopy to FAFB?

#43 r-shruthi11 closed 5 years ago
4
New function for calculating contributions by time

#42 mmc46 closed 5 years ago
3
Teach open_fafb to work with vector inputs

#41 jefferis closed 6 years ago
0
simplify_neuron fails when spine has 1 branch only

#40 jefferis closed 6 years ago
0
fetchn_fafb should be able to cope with FAFB as the reference

#39 jefferis closed 6 years ago
1
teach simplify_neuron to handle the inverse as well

#38 jefferis closed 6 years ago
1
simplify_neuron should work for n>1 branch points as well

#37 jefferis closed 6 years ago
2
stitch_neurons fails with nat 1.9

#36 jefferis closed 6 years ago
1
IVLP -> WED in FAFBNP surfaces

#35 jefferis closed 6 years ago
2
summarise_contribution type for 'synapse' same as 'pre'

#34 mmc46 closed 6 years ago
1
Complete FAFB14 update

#33 jefferis closed 6 years ago
1
fetchn_fafb/nblast_fafb takes neuronlist as input

#32 zhihaozheng closed 7 years ago
5
distal_to ignores the 'root' argument

#31 zanemit closed 7 years ago
0
`summary.nblastfafb` subsets results before ordering

#30 schlegelp opened 7 years ago
3
unspike loses connectors

#29 mmc46 closed 7 years ago
1
open_fafb should use different default stack

#28 jefferis closed 7 years ago
0
option to set default number of cores for nblast

#27 jefferis closed 7 years ago
0
open_fafb playing up

#26 alexanderbates closed 7 years ago
1
Add FAFB13 surfaces (so that we don't need CMTK to make these)

#25 jefferis closed 7 years ago
1
teach open_fafb to add extra parameters to url

#24 jefferis closed 7 years ago
0
open_fafb jumping to wrong place in v13

#23 jefferis closed 7 years ago
0
nblast_fafb fails if database has <100 entries

#22 jefferis closed 7 years ago
0
Add reference to elm.landmarks help

#21 jefferis closed 7 years ago
0
Feature/fafb coord mapper

#20 jefferis closed 7 years ago
0
Option to prune small twigs before nblast

#19 jefferis closed 5 years ago
10
Simplify stitching neuronlist with many neurons that need to be stitched

#18 jefferis closed 4 years ago
0
travisify for CI

#17 jefferis opened 8 years ago
0
xform.tpsreg needs to handle inversion properly

#16 jefferis closed 8 years ago
0
tpsreg should use nat nomenclature for reference and sample brains

#15 jefferis closed 8 years ago
0
Teach elmr functions to use/set default template brains on objects

#14 jefferis closed 8 years ago
1
switch to nat.templatebrains xform_brain

#13 jefferis closed 8 years ago
1
xform does not change connector coordinates

#12 alexanderbates closed 8 years ago
1
add function to parse url to location skid etc

#11 jefferis closed 8 years ago
1
teach summary/plot methods to cope with non-standard dbs

#10 jefferis closed 8 years ago
2
teach nblast_fafb and plot, summary methods to store/fetch db

#9 jefferis opened 8 years ago
0
teach nblast_fafb to do reverse nblast searches

#8 jefferis closed 8 years ago
0
teach nblast_fafb to use other templates

#7 jefferis closed 8 years ago
0
nblast_fafb database selection fails

#6 arheath closed 8 years ago
0