ncbi-nlp bluebert issues

ncbi-nlp / bluebert

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

https://arxiv.org/abs/1906.05474

Other

558 stars 78 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Bump tensorflow from 2.5.3 to 2.11.1

#50 dependabot[bot] opened 1 year ago
0
Bump tensorflow from 2.5.3 to 2.9.3

#49 dependabot[bot] closed 1 year ago
1
Bump tensorflow from 2.5.3 to 2.7.2

#48 dependabot[bot] closed 1 year ago
1
Bump tensorflow from 2.5.3 to 2.6.4

#47 dependabot[bot] closed 2 years ago
1
Bump tensorflow from 1.15.4 to 2.5.3

#46 dependabot[bot] closed 2 years ago
0
Bump tensorflow from 1.15.4 to 2.5.1

#45 dependabot[bot] closed 2 years ago
1
Bump tensorflow from 1.15.4 to 2.5.0

#44 dependabot[bot] closed 3 years ago
1
prediction on new dataset

#43 Ria312 closed 3 years ago
1
Is it possible to use HugginFaces blubert for mt-bluebert?

#42 galsk87 opened 3 years ago
0
Why are test labels always `'neutral'`?

#41 seanswyi closed 3 years ago
1
Pre-trained model for NER

#40 mshtelma opened 3 years ago
1
Where do I get the `train.tsv` file for the BC5CDR NER task?

#39 seanswyi closed 3 years ago
0
forward() got an unexpected keyword argument 'labels'

#38 zkysfls opened 3 years ago
0
Pre-training BERT on PUBMED

#37 saboof closed 3 years ago
1
ERROR when torch.load("pytoch_model.bin") downloaded from huggingface

#36 yolochai closed 4 years ago
4
Add MriBERT

#35 yfpeng closed 4 years ago
0
How to interpret STS output.

#34 DrameMariama closed 3 years ago
1
Need setup.py file for specifying dependency to bluebert repo

#33 itsmemala closed 3 years ago
1
running tasks using saved PYTORCH model checkpoints as opposed to BLUEBERT TF checkpoints

#32 diegoolano opened 4 years ago
0
Bump tensorflow from 1.15.2 to 1.15.4

#31 dependabot[bot] closed 4 years ago
0
Evaluation on MedNLI dataset

#30 passing2961 closed 3 years ago
1
How to get Relation extraction from a plain text?

#29 BharathRajaGajula closed 4 years ago
1
How to Interpret the results of Relation Extraction?

#28 BharathRajaGajula closed 4 years ago
1
Relation Extraction on Chemport, Directory doesnot contain test.tsv

#27 BharathRajaGajula closed 4 years ago
0
NER Task on sample data

#26 raghavbali closed 4 years ago
1
Input data format for Named Entity Recognition

#25 CCYChongyanChen closed 4 years ago
1
ValueError: model_dir should be non-empty.

#24 ding-si-han closed 4 years ago
1
STS training

#23 luomancs closed 4 years ago
1
missing the vocab and config in pretrained model

#22 luomancs closed 4 years ago
2
Elmo results inconsistent

#21 caspillaga opened 4 years ago
0
KeyError when running run_bluebert_multi_labels.py

#20 snjie209 closed 4 years ago
7
Are the count of phrases different from that stated in your paper on ShARe/CLEFE?

#19 sy-wada closed 4 years ago
0
Finetuning ELMO: code crashes when list is empty

#18 caspillaga closed 4 years ago
1
Finetuning ELMO. Variable seqlen is not defined

#17 caspillaga closed 4 years ago
2
Bump tensorflow from 1.12.1 to 1.15.2

#16 dependabot[bot] closed 4 years ago
1
No module named "bert"

#15 BharathRajaGajula closed 4 years ago
1
How to use on NER and STS for the New Data?

#14 BharathRajaGajula closed 4 years ago
1
Bump tensorflow from 1.12.1 to 1.15.0

#13 dependabot[bot] closed 4 years ago
1
metrics to be printed( alteast loss) per step in logging

#12 adiv5 closed 4 years ago
0
Object not found! NCBI_BlueBERT-Base, Uncased, PubMed

#11 CaptainPenguin closed 4 years ago
1
ValueError:Shape of Embedding tensor not matching bert/embedding/word_embedding

#10 adiv5 closed 4 years ago
11
Input data for Document classification

#9 adiv5 closed 4 years ago
1
NCBI Bluebert

#8 yfpeng closed 4 years ago
0
Is there any cased version?

#7 sajastu closed 4 years ago
1
remove scripts

#6 yfpeng closed 5 years ago
0
How did you pre-train the NCBI abstract data exactly ?

#5 zhouyunyun11 closed 5 years ago
5
pretrain NCBI BERT based on new released WWM BERT model

#4 bugface closed 5 years ago
1
No paper link

#3 rodrigonogueira4 closed 5 years ago
3
link for downloading pretrained NCBI BERT model is missing

#2 Tian312 closed 5 years ago
1
init

#1 yfpeng closed 5 years ago
0