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NEAT
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Variants not inserted from input_variants (VCF) file provided
#117
alyssa-ab
closed
4 hours ago
2
Stuck in the “Covering dataset” step when changing default read length
#116
dani-ture
closed
4 hours ago
3
Develop
#115
joshfactorial
closed
4 hours ago
0
Processing of off-target reference regions using target bed file
#114
dani-ture
closed
4 hours ago
2
Excessive coverage bias
#113
dani-ture
closed
4 hours ago
3
NEAT utilities are not working
#112
nilchia
closed
4 hours ago
4
Develop
#111
joshfactorial
closed
1 month ago
0
Feature/simplifying coverage
#110
joshfactorial
closed
1 month ago
0
Develop
#109
joshfactorial
closed
1 month ago
0
Empty fastq file when running neat read-simulator + default config
#108
dani-ture
closed
1 month ago
4
bug fi
#107
joshfactorial
closed
1 month ago
0
Develop
#106
joshfactorial
closed
1 month ago
0
Conda env installs correctly but fails on poetry build step
#105
MTDouglas
closed
1 month ago
4
Reworked beds a bit, as they were not quite working correctly
#104
joshfactorial
closed
1 month ago
1
Develop
#103
joshfactorial
closed
2 months ago
0
Division by zero / cant disable target regions with discard
#102
DrinnanSante
closed
1 month ago
4
README updates
#101
joshfactorial
closed
3 months ago
0
Fixed a bug where mutation rate zero was causing some unexpected Pyth…
#100
joshfactorial
closed
3 months ago
0
Minor changes to output_file_writer
#99
keshav-gandhi
closed
3 months ago
0
Found a merge conflict
#98
joshfactorial
closed
3 months ago
0
'NoneType' object has no attribute 'quality_scores'
#97
ananya-0729
closed
3 months ago
5
Update README.md
#96
joshfactorial
closed
4 months ago
0
Feature/fixing coverage
#95
joshfactorial
closed
4 months ago
0
Mutations still introduced when mutation rate is 0
#94
harrytchild
closed
3 months ago
3
Rough timeline until stable release of NEAT 4
#93
wm75
closed
3 months ago
7
Added functionality for save trinucleotide
#92
keshav-gandhi
closed
3 months ago
0
Feature/compute fraglen
#91
joshfactorial
closed
7 months ago
0
Updated descriptions of the commands and small edits!
#90
keshav-gandhi
closed
6 months ago
0
Unable to run NEAT examples in the README
#89
NuriaQueralt
closed
3 months ago
10
Re evaluation of alignment bam files failed when calling with variant calling
#88
shafayetrahat
closed
1 month ago
10
Can't run read-simulator. Probably dependency problem
#87
shafayetrahat
closed
3 months ago
19
Vcf test
#86
joshfactorial
closed
8 months ago
0
Easy way to specify not to simulate indels in the mutation model?
#85
gwct
closed
3 months ago
5
Removing pybedtools dependency.
#84
keshav-gandhi
closed
8 months ago
1
Installation failure due to version conflicts
#83
linxy29
closed
9 months ago
5
Update ChangeLog.md
#82
joshfactorial
closed
9 months ago
0
Updates to README
#81
joshfactorial
closed
10 months ago
0
neat read-simulator takes very long
#80
Npaffen
closed
3 months ago
4
updating test config
#79
joshfactorial
closed
1 year ago
0
Develop
#78
joshfactorial
closed
1 year ago
0
Plotting function after pull.
#77
joshfactorial
closed
1 year ago
0
Feature/new semodel
#76
joshfactorial
closed
1 year ago
0
sequencing error rate scale
#75
mattbird567
closed
1 year ago
2
Skipped variants in VCF file
#74
mattbird567
closed
1 year ago
12
FP SNPs in "golden" vcf?
#73
georgiiprovisor
closed
1 month ago
5
Problem with vcf_compare_OLD.py
#72
georgiiprovisor
closed
1 year ago
6
Missing information from "golden" vcf output
#71
sfragkoul
closed
1 month ago
4
Error when sampling reads
#70
mattbird567
closed
1 year ago
1
Feature/modularization
#69
joshfactorial
closed
1 year ago
0
Inserting New variants using VCF file not inserting the SNP/INDELS
#68
vinaydeep26
closed
1 year ago
4
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