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nel-lab
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mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Error displaying widget when visualize raw & MCorr movie side-by-side
#216
kingmiaomiao
closed
1 year ago
13
Updating demo notebooks with latest fastplotlib version
#215
cardinLL
closed
1 year ago
9
cnmf_eval and cnmf_viz notebooks unable to import completed CNMF batch items (+ missing 'corr-img-path')
#214
wmsheer
closed
1 year ago
5
update nbs to use latest fastplotlib and mesmerize-viz
#213
kushalkolar
closed
1 year ago
1
Cannot run multiple successive iterations of mcorr?
#212
wmsheer
closed
1 year ago
7
Create CODE_OF_CONDUCT.md
#211
kushalkolar
closed
1 year ago
0
added n_processes kwarg to caiman.run()
#210
happyqiu
opened
1 year ago
1
batch files cannot be used cross-platform
#209
kushalkolar
opened
1 year ago
5
Visualize patches and overlaps for mcorr and cnmf
#208
kushalkolar
closed
9 months ago
1
Cloud files
#207
vkonan
closed
1 year ago
2
Cannot import name 'get_color' when importing fastplotlib
#206
msoheib
closed
1 year ago
3
ValueError: need at most 63 handles, got a sequence of length 65
#205
Forest-Speed
closed
1 year ago
2
allow passing kwargs from `LazyVideo` to `decord.VideoReader`
#204
kushalkolar
closed
1 year ago
0
progress bar
#203
vkonan
closed
1 year ago
13
allow removing failed or not run items
#202
kushalkolar
closed
1 year ago
0
`LazyTiff` is slow even if shape is provided
#201
kushalkolar
closed
9 months ago
1
remove lazy array interface and replace with only the implementations
#200
kushalkolar
closed
9 months ago
0
allow more file formats, specific more columns in create_batch(), update tests
#199
kushalkolar
closed
1 year ago
5
Caiman Notebook Demo Error
#198
ambtetl
closed
1 year ago
17
How to pass var_name_hdf5 when running mcorr
#197
oterocoronel
opened
1 year ago
2
Using list of paths for input_movie_paths
#196
oterocoronel
closed
9 months ago
2
Error while computing reconstructed background or residuals
#195
X4ndri
closed
9 months ago
12
conversion of old mesmerize batches
#194
kushalkolar
closed
9 months ago
1
avi files for 1p cnmfe
#193
yunip20
closed
1 year ago
2
allow manually setting shape
#192
kushalkolar
closed
1 year ago
0
disable cache for windows users
#191
clewis7
closed
1 year ago
0
concatenation of LazyArrays
#190
kushalkolar
closed
1 year ago
2
fix WrongAlgorithMException error message in `@validate()`
#189
kushalkolar
closed
1 year ago
0
fixing bug in time()
#188
clewis7
closed
1 year ago
0
consider offering a MongoDB backend
#187
kushalkolar
closed
12 months ago
2
use `n_processes` kwarg for `caiman.run()`
#186
kushalkolar
opened
1 year ago
0
cnmfe demo
#185
kushalkolar
closed
1 year ago
0
fix cnmfe algo runner
#184
kushalkolar
closed
1 year ago
0
make corr_image optional when running mcorr
#183
kushalkolar
opened
1 year ago
0
compute projections only after mcorr, use `get_parent()` if `get_projection()` called on cnmf item
#182
kushalkolar
opened
1 year ago
0
visualize components one by one using a slider
#181
kushalkolar
closed
1 year ago
1
mcorr fails if input video has less than 1000 frames
#180
kushalkolar
opened
1 year ago
1
zmq issue AssertionError
#179
dprotter
closed
1 year ago
4
movie dimension changed from 3d to 4d when loading using lazytiff
#178
asharma11
closed
1 year ago
3
LazyMongo array for accessing data in a MongoDB
#177
kushalkolar
closed
1 year ago
1
expand docs
#176
kushalkolar
closed
8 months ago
0
more `LazyArray` stuff
#175
kushalkolar
closed
1 year ago
0
CONDA_PREFIX_1 error when running , row.caiman.run() on jupyter lab mac m1
#174
Vignesh-786
closed
9 months ago
5
lazy loading hdf5 files
#173
vncntprvst
closed
1 year ago
2
1-p/cnmfe
#172
katesal327
closed
1 year ago
12
Look into arrow
#171
kushalkolar
closed
12 months ago
1
Add ability to read .avi files
#170
emelon8
closed
1 year ago
28
Add ability to remove items that have not been run
#169
X4ndri
closed
1 year ago
1
more better demo nbs
#168
kushalkolar
closed
6 months ago
0
allow movie_reader kwargs for caiman.get_input_movie()
#167
kushalkolar
closed
1 year ago
0
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