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nel-lab
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mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Pass kwargs to movie reader functions
#166
kushalkolar
closed
1 year ago
0
probably bug in common
#165
kushalkolar
closed
1 year ago
3
workaround for `LazyTiff` not working with `fastplotlib.ImageWidget` `window_funcs`
#164
kushalkolar
closed
1 year ago
1
set default `swap_dim=False` for `cnmf.get_contours()`
#163
kushalkolar
closed
12 months ago
1
cnmfe fails with keyerror: downsample_ratio
#162
X4ndri
closed
1 year ago
2
Updating from 0.1.0.b1 to 0.1.0
#161
EricThomson
closed
1 year ago
1
`caiman.remove_item()` doesn't work on windows if the memmap file is currently open
#160
kushalkolar
closed
8 months ago
1
put batch runfiles in the batch dir
#159
kushalkolar
opened
1 year ago
0
things to add to `ImageGraphic` and `ImageWidget`
#158
kushalkolar
closed
1 year ago
1
smaller tests
#157
kushalkolar
closed
8 months ago
0
Better demo nb
#156
kushalkolar
closed
1 year ago
1
V0.1 dev -> master
#155
kushalkolar
closed
1 year ago
1
caiman changed memmap naming
#154
kushalkolar
closed
1 year ago
1
Better example notebooks
#153
kushalkolar
closed
12 months ago
1
add OnACID algo
#152
kushalkolar
closed
9 months ago
2
Example notebook using fastplotlib to toggle components as good or bad
#151
kushalkolar
closed
1 year ago
1
not all tiff files support memmaping
#150
kushalkolar
closed
1 year ago
1
Better demo nb
#149
kushalkolar
closed
1 year ago
2
Popen.wait() called by default using 'wait' kwarg to caiman.run()
#148
kushalkolar
closed
1 year ago
0
made better docstrings
#147
kushalkolar
closed
1 year ago
0
movie reader, tiff memmap, caiman memmap and pims
#146
kushalkolar
closed
1 year ago
0
better docstrings
#145
kushalkolar
closed
1 year ago
0
LazyArray for file reading
#144
kushalkolar
closed
1 year ago
1
Update demos to use `ImageWidget`
#143
kushalkolar
closed
1 year ago
2
see if there's a way to get series extension docstrings to appear when a user does `iloc`
#142
kushalkolar
opened
1 year ago
0
adding timestamp features
#141
clewis7
closed
1 year ago
4
Lazy arrays
#140
kushalkolar
closed
1 year ago
1
create array-like object for reconstructed movie, background and residuals
#139
kushalkolar
closed
1 year ago
1
add a `wait=True` kwarg to `caiman.run()`
#138
kushalkolar
closed
1 year ago
1
Update demo nb to use ImageWidget
#137
kushalkolar
closed
1 year ago
0
Check that all UUIDs match with caiman.save_to_disk()
#136
kushalkolar
opened
1 year ago
0
lockfile to protect batch dataframe
#135
kushalkolar
closed
1 year ago
1
automate caimanmanager stuff in mesmerize-core
#134
kushalkolar
closed
1 year ago
1
remove older tests and use smaller groundtruths file
#133
kushalkolar
closed
9 months ago
0
figure out what's up with mac CI runs
#132
kushalkolar
closed
1 year ago
0
add local backend to `caiman.run()`
#131
kushalkolar
closed
1 year ago
0
Add local backend to `caiman.run()`
#130
kushalkolar
closed
1 year ago
0
reuse memmaps across batch items
#129
kushalkolar
closed
9 months ago
1
Centering scenes after motion correction
#128
WhereWolf72
closed
2 years ago
8
Add "added timestamp" and "ran timestamp" as default columns
#127
kushalkolar
closed
1 year ago
1
safety check to prevent small sub dataframe from overwriting full dataframe on disk
#126
kushalkolar
closed
2 years ago
0
df.caiman.save_to_disk() should raise if diff is greater than 1 row, allow kwarg to override
#125
kushalkolar
closed
2 years ago
0
allow passing `pd.Series` batch item directly as `input_movie_path` to`'caiman.add_item()`
#124
kushalkolar
closed
2 years ago
0
Try regular multiprocessing.Process for running algos for windows
#123
kushalkolar
closed
1 year ago
1
no batch output - Windows OS
#122
katesal327
closed
1 year ago
0
dataframe extensions to copy and rsync all batch data.
#121
kushalkolar
closed
9 months ago
1
try to fix windows weird cache uuid test
#120
kushalkolar
closed
1 year ago
0
add caiman.backup_dataframe(), change index parsing
#119
kushalkolar
opened
2 years ago
0
make sure parent raw data path exists, else throw exception
#118
kushalkolar
closed
2 years ago
0
fresh ubuntu install - caiman
#117
katesal327
closed
1 year ago
7
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