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nel-lab
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mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Getting denoised dF/F
#260
kingmiaomiao
closed
8 months ago
6
Assessing the noise level before gsig_filt
#259
zhouyi0812
closed
7 months ago
6
Evaluate Bleaching on the movie
#258
zhouyi0812
closed
9 months ago
5
Movie path and caiman path can be different?
#257
zhouyi0812
closed
9 months ago
2
Kernel unexpectedly dying; line of code: viz_cnmf.show(sidecar=True)
#256
santicolom
closed
7 months ago
10
NotImplementedError: cannot instantiate 'PosixPath' on your system
#255
qweasdf1354
closed
9 months ago
3
AttributeError: 'TiffPageSeries' object has no attribute 'levels'
#254
santicolom
closed
9 months ago
2
ValueError: all the input array dimensions except for the concatenation axis must match exactly, but along dimension 0, the array at index 0 has size 140 and the array at index 1 has size 141
#253
qweasdf1354
closed
7 months ago
57
TypeError: Cannot convert '<H' to wgpu format. You should provide data with a different dtype.
#252
santicolom
closed
9 months ago
2
Error when play the motion correction with new notebook
#251
zhouyi0812
closed
9 months ago
2
Jupyter Notebook only uses 50% CPU
#250
bashsyr
closed
7 months ago
5
Could I manually set the eval? using the code
#249
qweasdf1354
closed
9 months ago
5
How to get z score of raw and deltaF/F
#248
qweasdf1354
closed
9 months ago
4
TraitError: Setting min > max when viz_cnmf = df.cnmf.viz() viz_cnmf.show()
#247
qweasdf1354
closed
9 months ago
8
Consider using pytorch for LazyVideo instead of decord
#246
kushalkolar
closed
6 months ago
1
Add component eval instructions to notebook
#245
kushalkolar
closed
10 months ago
1
Batch error unsuccessful
#244
zhouyi0812
closed
7 months ago
49
Error with mescore env installation: 'caimanmanager' is not recognized as an internal or external command, operable program or batch file.
#243
SofiaTorchia
closed
10 months ago
3
reorganize demos, use mesviz
#242
kushalkolar
closed
10 months ago
0
gSig_filter used twice in demo
#241
zhouyi0812
closed
9 months ago
2
TypeError: Graphic.__init__() got an unexpected keyword argument 'vmin_vmax_sliders'
#240
qweasdf1354
closed
10 months ago
54
cnmfe component evaluation load batch hdf5 vs. mmap file
#239
zhouyi0812
closed
9 months ago
2
Small fixes
#238
kushalkolar
closed
10 months ago
0
Installation discrepancies with Caiman
#237
kfouke1
closed
10 months ago
25
Import hdf5 file with mes
#235
zhouyi0812
closed
10 months ago
36
Use mescore namespace in demos
#234
kushalkolar
closed
10 months ago
0
fix `get_params_diff()`, return as dataframe instead of series of dicts
#233
kushalkolar
closed
10 months ago
0
Do not export unnecessary conda env vars, use conda run
#232
rly
closed
3 months ago
5
Tests are failing
#231
rly
opened
11 months ago
1
Missing CONDA_PREFIX_1 env var to run cnmfe notebook on macOS
#230
rly
closed
3 months ago
6
TraitError in cnmfe notebook
#229
rly
closed
7 months ago
1
Update install instructions for caimanmanager
#228
rly
closed
11 months ago
2
caimanmanager step of installation instructions is incorrect on macOS
#227
rly
closed
11 months ago
0
playing with pynapple
#226
kushalkolar
opened
11 months ago
1
start simple.ipynb
#225
kushalkolar
opened
11 months ago
0
make a very simple nb
#224
kushalkolar
closed
10 months ago
1
eval nb progress
#223
kushalkolar
closed
10 months ago
2
probably unecessary code cell in example jupyter nb
#222
kushalkolar
closed
10 months ago
0
build issues
#221
kushalkolar
opened
1 year ago
0
Running mcorr doesn't computer pnr image
#220
X4ndri
closed
1 year ago
2
Unable to install mesmerize_core
#219
zhouyi0812
closed
1 year ago
7
update notebooks
#218
clewis7
closed
1 year ago
5
Issues with ImageWidget.plot
#217
asharma11
closed
1 year ago
6
Error displaying widget when visualize raw & MCorr movie side-by-side
#216
kingmiaomiao
closed
1 year ago
13
Updating demo notebooks with latest fastplotlib version
#215
cardinLL
closed
1 year ago
9
cnmf_eval and cnmf_viz notebooks unable to import completed CNMF batch items (+ missing 'corr-img-path')
#214
wmsheer
closed
1 year ago
5
update nbs to use latest fastplotlib and mesmerize-viz
#213
kushalkolar
closed
1 year ago
1
Cannot run multiple successive iterations of mcorr?
#212
wmsheer
closed
1 year ago
7
Create CODE_OF_CONDUCT.md
#211
kushalkolar
closed
1 year ago
0
added n_processes kwarg to caiman.run()
#210
happyqiu
opened
1 year ago
1
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