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nel-lab
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mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
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Analyzing TIFF files with time frames < 500
#323
ViciousPlants
opened
1 day ago
2
Parallelize projection computation and avoid running out of memory
#322
ethanbb
opened
1 month ago
0
Use F order when reshaping masks
#321
ethanbb
closed
1 month ago
2
dimensionality error
#320
vkonan
closed
2 months ago
5
Exporting RCM as a .TIFF
#319
vkonan
closed
2 months ago
3
Current status of mesmerize-viz and fastplotlib?
#318
FlynnOConnell
closed
2 months ago
2
Make get_shifts return value more useful; add test for shifts
#317
ethanbb
closed
2 months ago
0
Downstream analysis?
#316
Agrajag1984
opened
2 months ago
5
Fix conda builds defaulting to python 3.12
#315
ethanbb
closed
2 months ago
1
Fix z shift saving for piecewise mcorr
#314
ethanbb
closed
2 months ago
0
Installation Issues
#313
CeeLo
opened
3 months ago
10
Question/ issue: Does mesmerise-core work with 3D movies?
#312
rajlakshmi-sawale
opened
3 months ago
29
Add async_local backend and allow using an existing dview for local and async_local backends
#311
ethanbb
opened
3 months ago
3
List of shifts for pw_rigid motion correction is difficult to interpret
#310
ethanbb
closed
2 months ago
3
Don't filter out NaNs for contours
#309
ethanbb
opened
4 months ago
13
Filtering out NaNs in contours creates spurious lines between sub-contours and rust panic if any contours are empty
#308
ethanbb
opened
4 months ago
0
Kernel unexpectedly dying; line of code: viz_cnmf.show
#307
CharlotteWenxin
closed
2 months ago
16
caimanmanager install no longer working with SciPy 1.14
#306
gusmihaian
closed
5 months ago
1
Use Path.resolve() consistently to prevent UNC/drive letter ambiguity
#304
ethanbb
opened
5 months ago
3
Change get_params_diffs to only use <default> if param is actually missing
#303
ethanbb
closed
4 months ago
0
mcorr_cnmf notebook running cnmf error
#302
CharlotteWenxin
closed
5 months ago
2
installation problem
#301
CharlotteWenxin
closed
5 months ago
3
Fix motion correction and CNMF for 3D movies
#300
ethanbb
closed
3 months ago
5
More changes for nested parameters
#299
ethanbb
closed
4 months ago
1
Run items using SLURM; save batches with platform-independent paths
#298
ethanbb
closed
4 months ago
8
Allow non-hashable types and nested params in get_params_diffs
#297
ethanbb
closed
5 months ago
4
Motion correction output F order only
#296
zhouyi0812
closed
7 months ago
1
error: zerodivisionerror
#295
zhouyi0812
closed
7 months ago
4
What is the detrend_df_f function
#294
qweasdf1354
closed
7 months ago
1
No matching distribution found for LazyTiff
#292
lea-danics
closed
8 months ago
5
CNMF Fails on Windows with 'need at most 63 handles, got a sequence of length 65' Error
#291
Tepps-ps
closed
8 months ago
6
Module 'fpl' has no attribute 'ImageWidget'
#290
lea-danics
closed
8 months ago
2
AttributeError: 'TiffPageSeries' object has no attribute 'levels' with demo data
#289
zhouyi0812
closed
8 months ago
1
Error while running demo notebood 'mcorr_cnmf'
#285
pbl007
closed
8 months ago
3
AttributeError: 'TiffPageSeries' object has no attribute 'levels'
#284
zhouyi0812
closed
8 months ago
5
ModuleNotFoundError: No module named 'mesmerize_viz'
#283
zhouyi0812
closed
8 months ago
3
corr-pnr plot not accepting 'controllers' variable
#282
blogeman
closed
8 months ago
6
IndexError
#281
Frank497
closed
8 months ago
2
motion correction failed
#280
Frank497
closed
9 months ago
5
int32 not sufficient for nbytes
#279
nspiller
closed
9 months ago
3
widget wont load
#278
blogeman
closed
9 months ago
6
demo for downstream analysis
#277
zhouyi0812
closed
9 months ago
3
Computer crashes with cnmf.run_detrend_dfof
#276
restrepd
closed
9 months ago
2
Error in loop cnmfe
#275
zhouyi0812
closed
8 months ago
3
extract mcorr movie as tiff
#274
Jorgenhoyer
closed
9 months ago
4
problem with caiman.remove_item
#273
Jorgenhoyer
closed
9 months ago
4
Issues with mesmerize Execution: Missing Packages in Active Conda Environment
#272
Tepps-ps
closed
9 months ago
19
`python: command not found error` when calling runfile
#271
vncntprvst
opened
9 months ago
1
run_eval output
#270
zhouyi0812
closed
8 months ago
10
How to adjust n_processes in mescore
#269
zhouyi0812
closed
9 months ago
1
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