nemoarchive analytics issues

nemoarchive / analytics

Repository for the NeMO Analytics project.

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issues

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Make cross-species profiles available for paper submission

#108 jorvis closed 4 years ago
20
no access to saved analysis when trying to curate view for "Human Fetal Cortex scRNAseq (Nowakowski et al. 2017 Science)"

#107 carlocolantuoni opened 4 years ago
0
subcluster comparison using workbench

#106 hertzron opened 4 years ago
0
allow skipping 'marker genes' in primary analysis

#105 hertzron opened 4 years ago
0
projectR implementation in NeMO Analytics

#104 carlocolantuoni closed 2 years ago
2
standard dynamic scatter plots in NeMO have no x and y axis labels

#103 carlocolantuoni closed 4 years ago
8
"arrangement" button greyed when editing NeoCortical Development profile as curator

#102 carlocolantuoni closed 3 years ago
16
allow 'compare two clusters' in the workbench without having to first 'identify marker genes'

#101 hertzron opened 4 years ago
1
cant make static tSNE plot for data set "ARKctxDevo400sc"

#100 carlocolantuoni closed 4 years ago
11
Connect gEAR and DVD (Deafness Variation Database)

#99 hertzron opened 4 years ago
3
"add to this profile" and "remove from profile" buttons are absent or greyed out when in dataset manager in the NeMO currator account.

#98 carlocolantuoni closed 4 years ago
18
minor - mouse over on NeMO graphics reads "gEAR Home" (and text in graphic is blurred)

#97 carlocolantuoni closed 4 years ago
1
Make BICCN Mini-Atlas (Transcript) the default profile

#96 seth-ament closed 4 years ago
1
Page titles say 'gEAR' rather than NeMO Analytics

#95 jorvis closed 4 years ago
0
Single-dataset 'View' is not working

#94 seth-ament closed 4 years ago
7
Louvain step failing to start

#93 jorvis closed 4 years ago
1
Upload and test 40k single cell RNAseq data set "CtxDevoMidGestGesch40k"

#92 carlocolantuoni closed 3 years ago
15
Process New DS sent over by Carlo

#91 apaala closed 4 years ago
20
Set up cron to run uploader

#90 apaala closed 4 years ago
17
Create log files - cron uploader

#89 apaala closed 4 years ago
0
Spiny gear DB -cron uploader

#88 apaala closed 4 years ago
2
JSON metadata flexibility- metadatavalidator.py/cron uploader

#87 apaala closed 3 years ago
3
Tab Analysis File - cron uploader

#86 apaala closed 3 years ago
3
Find moved files - cron uploader

#85 apaala closed 4 years ago
4
Correction to a dataset in the HRP profile

#84 hertzron closed 4 years ago
1
put ingest cron in place

#83 RLC-DCPPC closed 4 years ago
1
integrate metadata

#82 RLC-DCPPC closed 4 years ago
0
Resolve universal sample name issue

#81 RLC-DCPPC closed 4 years ago
1
Plot single tsne for profiles with common clustering across samples

#80 brianherb opened 4 years ago
0
Action items & notes from BICCN phone call 11/22/2019

#79 hertzron opened 5 years ago
10
Control color of plots in side-by-side plots

#78 brianherb closed 4 years ago
1
profiles for flagship papers

#77 RLC-DCPPC opened 5 years ago
0
Submit paper with BICCN release (-ARchive and -Analytics)

#76 RLC-DCPPC opened 5 years ago
0
Incorrect gene symbols in POU3F2oeNPC

#75 jorvis closed 5 years ago
5
Explore clusters from the Integrative analysis with Epiviz

#74 RLC-DCPPC opened 5 years ago
1
Generate demonstration dataset for integrated data visualization with EpiViz

#73 RLC-DCPPC opened 5 years ago
2
TrackHub integration

#72 jkanche opened 5 years ago
0
gEAR manuscript

#71 RLC-DCPPC opened 5 years ago
1
change curator password

#70 RLC-DCPPC closed 5 years ago
2
Add support for JSON uploads of metadata

#69 RLC-DCPPC closed 5 years ago
6
GUI for Dimension Reduction, Projection and Subsetting

#68 RLC-DCPPC opened 5 years ago
0
handle multiple types of data for the same cell

#67 RLC-DCPPC opened 5 years ago
0
execute projectR

#66 RLC-DCPPC closed 5 years ago
1
MOPs datasets do not show up as available for analysis with the scWorkbench

#65 seth-ament closed 5 years ago
6
curate mini-atlas data (MOp)

#64 seth-ament opened 5 years ago
2
curator not loading available views?

#63 seth-ament closed 5 years ago
2
working with single-cell epigenomics data

#62 RLC-DCPPC opened 5 years ago
0
uploading additional datasets into gEAR

#61 RLC-DCPPC closed 4 years ago
2
gene regulatory networks

#60 RLC-DCPPC opened 5 years ago
1
PCA projectR: write a script to precompute PCA on datasets during upload

#59 RLC-DCPPC closed 5 years ago
1

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