nextflow-io nf-schema issues

nextflow-io / nf-schema

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

https://nextflow-io.github.io/nf-schema/

Apache License 2.0

12 stars 21 forks source link

issues

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Fixes display of configFiles entries in parameter summary text

#76 scwatts closed 2 weeks ago
4
Nextflow config files not appearing in configFiles parameter summary display text

#75 scwatts closed 2 weeks ago
2
Release 2.2.0

#74 nvnieuwk closed 3 weeks ago
0
Add decent error messages for wrongly used file-path-pattern

#73 nvnieuwk closed 3 weeks ago
1
add missing depedency for email format support

#72 nvnieuwk closed 3 weeks ago
0
Improve custom error message handling

#71 nvnieuwk closed 3 weeks ago
0
Fix race conditions

#70 nvnieuwk closed 4 weeks ago
0
Add a warning to the `exists` docs

#69 nvnieuwk closed 4 weeks ago
1
Missing class for handling email format if parameter is passed with an email value

#68 toniher closed 3 weeks ago
1
Non-informative message for file-path format that should be file-path-pattern

#67 toniher closed 3 weeks ago
1
Add extra config options

#66 nvnieuwk closed 4 weeks ago
1
Fix using `samplesheetToList` multiple times in channel operators

#65 nvnieuwk closed 1 month ago
4
Consider displaying both technical (nf-schema default) and human-readable errors (`message:`) to users

#64 jfy133 closed 3 weeks ago
1
Fix `uniqueEntries` on empty optional values

#63 nvnieuwk closed 1 month ago
0
Failed to define certain columns unique in taxprofiler

#62 LilyAnderssonLee closed 1 month ago
0
Deprecation and suggested replacement(s) of of `unique:` property is not a one-to-one functionality

#61 jfy133 closed 1 month ago
2
Deprecation and suggested replacement(s) of of `unique:` property is not a one-to-one functionality

#60 jfy133 closed 1 month ago
1
Empty values are also validated (for being unique)

#59 Joon-Klaps closed 1 month ago
2
Fix wrong info in the docs

#58 nvnieuwk closed 1 month ago
0
Don't run `exists` checks when the format is not a file format

#57 nvnieuwk closed 4 weeks ago
1
feat: add nf_test_output to ignoreParams

#56 emmcauley closed 2 months ago
0
Using samplesheetToList twice gives corrupted output channels

#55 SPPearce closed 4 weeks ago
4
Ignore the `nf_test_output` parameter

#54 nvnieuwk closed 2 months ago
2
Fix small issues in the migration commands

#53 nvnieuwk closed 2 months ago
1
Use a trace observer for the help message creation instead of the extensionpoint

#52 nvnieuwk opened 2 months ago
0
Idea: Validate parameters when the parameter has been changed

#51 nvnieuwk opened 2 months ago
9
Add smarter typecasting to the samplesheet converter

#50 nvnieuwk opened 3 months ago
0
More patch fixes

#49 nvnieuwk closed 2 months ago
0
Fix the uniqueEntries filtering

#48 stekaz closed 2 months ago
3
Fix help params being unexpected parameters

#47 nvnieuwk closed 3 months ago
0
New `--helpFull` and `--showHidden` parameters give warnings for validation

#46 nvnieuwk closed 3 months ago
0
Add an option to hide params from the summary

#45 nvnieuwk closed 3 weeks ago
0
`beforeText` and `afterText` for summary logs + color filter

#44 nvnieuwk closed 3 months ago
0
Add `beforeText` and `afterText` configuration options for the `parameterSummaryLog` function

#43 nvnieuwk closed 3 months ago
0
Update docs with latest changes

#42 nvnieuwk closed 3 months ago
2
Improvement/help messages

#41 nvnieuwk closed 3 months ago
2
support $defs

#40 nvnieuwk closed 3 months ago
0
Feat/nested params

#39 nvnieuwk closed 3 months ago
1
Add a warning about nf-core tooling to the migration guide

#38 nvnieuwk closed 4 months ago
0
Fix org.json vulnerability

#37 nvnieuwk closed 4 months ago
1
request: vulnerability fix

#36 mvforster closed 4 months ago
6
Make validateParameters function assigns (optionally) default values defined in the schema

#35 jfouret opened 6 months ago
1
Sample sheet channel factory docs tweaks

#34 ewels closed 6 months ago
0
Docs: Fix edit link

#33 ewels closed 6 months ago
3
Schema has allOf, but no definitions

#32 chriswyatt1 closed 6 months ago
2
Can we have a failUnrecognisedSamplesheetField or something similar

#31 maxulysse closed 3 weeks ago
3
Update meta schema

#30 nvnieuwk opened 6 months ago
2
Do not validate Azure or GCP storage paths

#29 adamrtalbot closed 6 months ago
6
Migration to nf-schema 2: `samplesheetToList` not found in `plugin/nf-schema`

#28 Tobiaspk closed 1 month ago
17
Add validation with nested schemas

#27 nvnieuwk closed 6 months ago
0