nextflow-io nf-schema issues

nextflow-io / nf-schema

Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines

https://nextflow-io.github.io/nf-schema/

Apache License 2.0

12 stars 4 forks source link

issues

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feat: add nf_test_output to ignoreParams

#56 emmcauley closed 2 weeks ago
0
Using samplesheetToList twice gives corrupted output channels

#55 SPPearce opened 2 weeks ago
1
Ignore the `nf_test_output` parameter

#54 nvnieuwk closed 1 week ago
2
Fix small issues in the migration commands

#53 nvnieuwk closed 2 weeks ago
1
Use a trace observer for the help message creation instead of the extensionpoint

#52 nvnieuwk opened 1 month ago
0
Idea: Validate parameters when the parameter has been changed

#51 nvnieuwk opened 1 month ago
4
Add smarter typecasting to the samplesheet converter

#50 nvnieuwk opened 1 month ago
0
More patch fixes

#49 nvnieuwk closed 2 weeks ago
0
Fix the uniqueEntries filtering

#48 stekaz closed 4 weeks ago
3
Fix help params being unexpected parameters

#47 nvnieuwk closed 1 month ago
0
New `--helpFull` and `--showHidden` parameters give warnings for validation

#46 nvnieuwk closed 1 month ago
0
Add an option to hide params from the summary

#45 nvnieuwk opened 1 month ago
0
`beforeText` and `afterText` for summary logs + color filter

#44 nvnieuwk closed 1 month ago
0
Add `beforeText` and `afterText` configuration options for the `parameterSummaryLog` function

#43 nvnieuwk closed 1 month ago
0
Update docs with latest changes

#42 nvnieuwk closed 1 month ago
2
Improvement/help messages

#41 nvnieuwk closed 1 month ago
2
support $defs

#40 nvnieuwk closed 2 months ago
0
Feat/nested params

#39 nvnieuwk closed 1 month ago
1
Add a warning about nf-core tooling to the migration guide

#38 nvnieuwk closed 3 months ago
0
Fix org.json vulnerability

#37 nvnieuwk closed 3 months ago
1
request: vulnerability fix

#36 mvforster closed 3 months ago
6
Make validateParameters function assigns (optionally) default values defined in the schema

#35 jfouret opened 4 months ago
1
Sample sheet channel factory docs tweaks

#34 ewels closed 5 months ago
0
Docs: Fix edit link

#33 ewels closed 5 months ago
3
Schema has allOf, but no definitions

#32 chriswyatt1 closed 4 months ago
2
Can we have a failUnrecognisedSamplesheetField or something similar

#31 maxulysse opened 5 months ago
2
Update meta schema

#30 nvnieuwk opened 5 months ago
2
Do not validate Azure or GCP storage paths

#29 adamrtalbot closed 5 months ago
6
Migration to nf-schema 2: `samplesheetToList` not found in `plugin/nf-schema`

#28 Tobiaspk opened 5 months ago
16
Add validation with nested schemas

#27 nvnieuwk closed 5 months ago
0
Silenced false warnings

#26 nvnieuwk closed 1 month ago
1
Docs clarification

#6 nvnieuwk closed 5 months ago
0
Change params to config

#5 nvnieuwk closed 5 months ago
2
Make configuration values from all built-in parameters

#4 nvnieuwk closed 5 months ago
2
Remove `.fromSamplesheet`, but create an equivalent function `samplesheetToList`

#3 nvnieuwk closed 5 months ago
23
Add conditional validation depending on the parameter type to the meta-schema

#2 fbdtemme opened 6 months ago
0
rebrand nf-validation to nf-schema

#1 nvnieuwk closed 5 months ago
2
Strict validation of input samplesheet.csv

#7 jannikseidelQBiC opened 6 months ago
1
Inconsistent behaviour for "empty" CSV column of unrequired file

#8 awgymer opened 7 months ago
6
Upgrade to groovy 4

#9 nvnieuwk opened 8 months ago
0
Pattern validation not working when using scheme without header

#10 drpatelh opened 8 months ago
4
Expected behaviour for booleans with no set default

#11 awgymer opened 9 months ago
1
respect NF ANSI log setting

#12 ahvigil opened 10 months ago
0
Path existance check assumes "definisions" in schema

#13 mateuszpawlik opened 10 months ago
7
Plugin references both `monochrome_logs` and `monochromeLogs`

#14 Midnighter closed 5 months ago
1
Depreciate & remove `mimetype`

#15 ewels closed 5 months ago
2
Validation of Azure directory-paths causes issues

#16 apetkau closed 5 months ago
13
Better AWS S3 path handling

#17 nvnieuwk opened 12 months ago
0
validateParameters failed on schema_input.json when running nf-core pipelines in offline-mode

#18 asp8200 opened 1 year ago
6
nf-validation fails on validateParameters when schema_input.json is not standard

#19 maxulysse opened 1 year ago
3