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nextflow-io
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patterns
A curated collection of Nextflow implementation patterns
http://nextflow-io.github.io/patterns/
MIT License
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Create .gitpod.yml
#49
sateeshperi
closed
10 months ago
2
Multiple optional inputs
#48
shihabdider
opened
10 months ago
1
Fix typos
#47
mribeirodantas
closed
1 year ago
2
Added an example for creating a channel from json input
#46
anttitakalahti
closed
1 year ago
2
Update optional-input.md so it doesn't fail on Batch
#45
odoublewen
closed
1 year ago
2
Add pattern for conditional process execution based on a channel result
#44
bentsherman
closed
1 year ago
0
Example of conditional execution based on channel output
#43
nick-youngblut
closed
1 year ago
0
Example for optional input in tuple?
#42
ScottNortonPhD
opened
1 year ago
1
Add workflow grouping pattern
#41
bentsherman
closed
1 year ago
0
Example of aggregating file with associated metadata
#40
nick-youngblut
opened
1 year ago
2
Typo for "Process when empty"?
#38
nick-youngblut
closed
1 year ago
2
Fix command line for sort filepairs
#37
mribeirodantas
closed
1 year ago
0
Add new pattern: create key to combine with it
#36
mribeirodantas
closed
1 year ago
0
Add new pattern for sorting FilePairs by sample name
#35
mribeirodantas
closed
1 year ago
2
Add nextflow.config and use full github repo path
#34
abhi18av
closed
1 year ago
0
Update optional-output.md
#33
abhi18av
closed
1 year ago
2
Update index-docinfo-footer.html for GA4
#32
evanfloden
closed
1 year ago
0
Add task batching example
#31
bentsherman
closed
2 years ago
0
Add example for handling commands that return non-zero exit code normally
#30
bentsherman
opened
2 years ago
0
Convert to mkdocs
#29
bentsherman
closed
1 year ago
16
Logo is not aligned
#28
pditommaso
closed
1 year ago
1
Merge patterns into main Nextflow docs
#27
bentsherman
closed
2 years ago
3
Update workflows to DSL2
#26
bentsherman
closed
2 years ago
9
Update process-collect.nf
#25
meowcat
opened
2 years ago
3
Multiple input and multiple output
#24
zillurbmb51
closed
1 year ago
1
Port the patterns to DSL2
#23
abhi18av
closed
2 years ago
0
Two patterns describing how to run a process when another process fails
#22
davidealbanese
opened
4 years ago
0
Add combinations pattern
#21
pditommaso
opened
4 years ago
0
Fix minor typo.
#20
heuermh
closed
4 years ago
1
Typo fix.
#19
egonw
closed
4 years ago
1
manipulating variable outside of scripts
#18
daudn
closed
1 year ago
1
correcting example code to match the expected behavior in `conditional-process.nf`
#17
davidmasp
closed
5 years ago
0
Change example code in `conditional-process.nf`
#16
davidmasp
closed
5 years ago
1
Parsing from initial run argument into process scripts
#15
DolapoA
closed
5 years ago
3
Add example how parse json file
#14
pditommaso
opened
5 years ago
0
Add pattern for optional execution using `until` operator
#13
evanfloden
opened
5 years ago
0
Adds pattern describing how to publish files from channel using collectFile
#12
winni2k
closed
1 year ago
12
Added custom grouping strategy in process-per-file-pairs
#11
mfoll
closed
6 years ago
1
Conditional channels.
#10
msmootsgi
closed
6 years ago
2
publishDir patterns
#9
KevinSayers
closed
6 years ago
3
adding saveAs pattern
#8
jsalignon
closed
6 years ago
3
fix typo
#7
alperyilmaz
closed
6 years ago
1
Blast example stuck
#6
ai4pharma
closed
6 years ago
1
blast-parallel.nf adding makeblastdb process
#5
mictadlo
closed
6 years ago
6
Added GitHub groovy syntax highlighting.
#4
ewels
closed
7 years ago
1
Groovy syntax on GitHub
#3
ewels
closed
7 years ago
5
Simple exmaple of joined two workflows
#2
jgrzebyta
closed
8 years ago
3
Dockerfile refers to non-existing file
#1
huguesfontenelle
closed
9 years ago
1