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nf-core
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airrflow
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
https://nf-co.re/airrflow
MIT License
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Installation issues - airrflow pipeline
#341
pnatarajan9
opened
6 days ago
3
Incorrect number of sequences
#340
eba28
opened
2 weeks ago
0
Changeo additional output fields
#339
giulioisac
closed
1 month ago
1
Apply PR review comments
#338
ggabernet
closed
1 month ago
0
Release 4.1
#337
ggabernet
closed
1 month ago
2
Immcantation version bump
#336
ggabernet
closed
1 month ago
1
Fix report plots
#335
ggabernet
closed
1 month ago
1
unselected RNA-seq based workflow
#334
mapo9
opened
1 month ago
3
Important! Template update for nf-core/tools v2.14.1
#333
nf-core-bot
closed
1 month ago
0
Important! Template update for nf-core/tools v2.14.0
#332
nf-core-bot
closed
2 months ago
1
Fastp sc
#331
mapo9
opened
2 months ago
1
Add the calculations of amino acid physicochemical properties from alakazam
#330
JustBioinfo
opened
2 months ago
0
Fix test full profile
#329
ggabernet
closed
2 months ago
0
Update germline reference parameters
#328
ggabernet
closed
2 months ago
1
Revert changes test_full
#327
ggabernet
closed
2 months ago
0
Add the calculations of physicochemical properties from alakazam
#326
JustBioinfo
opened
2 months ago
0
Release 4.0.0
#325
mapo9
closed
2 months ago
1
Make RAxML default, use profile for full size test
#324
ggabernet
closed
2 months ago
1
Error in value[[3L]](cond)
#323
rasmirnov
closed
2 months ago
1
Automatic clone_threshold is 'NA'. Consider setting --clonal_threshold manually.
#322
petemeng
closed
2 days ago
2
Dowser tips by isotype
#321
ggabernet
closed
2 months ago
1
Minor release bugfix 3.3.1
#320
ggabernet
closed
2 months ago
1
Minor bug fixes
#319
ggabernet
closed
2 months ago
1
How to draw a similar flowchart in the Pipeline summary section
#318
LiuH2020
closed
2 months ago
1
Fix badges in master
#317
ggabernet
closed
3 months ago
0
TRUST4 module
#316
mapo9
closed
2 months ago
3
Template Update + cellranger functionality
#315
mapo9
closed
3 months ago
1
Template update nf-core tools 2.13.1
#314
ggabernet
closed
3 months ago
1
updated nih url to add nlm
#313
ssnn-airr
closed
3 months ago
1
Add TRUST4 to nf-core/airrflow
#312
mapo9
opened
3 months ago
0
Bulk RNAseq pcr_target_locus specification
#311
loipf
closed
2 months ago
1
Bump versions and update software versions
#310
ggabernet
closed
3 months ago
2
AIRRflow error/fails at Dowser step
#309
margaretc-ho
closed
3 months ago
3
Important! Template update for nf-core/tools v2.13.1
#308
nf-core-bot
closed
3 months ago
0
URGENT: pin nf-validation version
#307
nvnieuwk
closed
3 months ago
2
Important! Template update for nf-core/tools v2.13
#306
nf-core-bot
closed
4 months ago
1
Updates cellranger_vdj
#305
ggabernet
closed
4 months ago
1
Making Immcantation container CI tests optional
#304
ggabernet
closed
4 months ago
1
Isotype and c_call columns
#303
eba28
closed
3 months ago
3
Merge template updates nf-core v2.12
#302
ggabernet
closed
5 months ago
2
Important! Template update for nf-core/tools v2.12
#301
nf-core-bot
closed
5 months ago
1
Fetch other databases than IMGT: AIRR reference set
#300
ggabernet
opened
5 months ago
0
Provide profile for NEB and TAKARA protocols
#299
ggabernet
closed
4 months ago
2
Add regions translations to final repertoire table
#298
ggabernet
opened
5 months ago
0
Diversity reports
#297
ggabernet
closed
5 months ago
1
Update immcantation container
#296
ggabernet
closed
5 months ago
1
Fix sequence plot in airrflow report
#295
ggabernet
closed
6 months ago
1
merge template updates
#294
ggabernet
closed
6 months ago
1
clonal_threshold accepts multiple values in nextflow_schema.json
#293
adamrtalbot
closed
6 months ago
5
Invalid nextflow_schema.json using list type.
#292
adamrtalbot
closed
6 months ago
0
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