nf-core airrflow issues

nf-core / airrflow

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

https://nf-co.re/airrflow

MIT License

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issues

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Double check that for all protocols, sequences with different Cprimers (isotypes) are not collapsed when collapsing duplicates

#356 ggabernet opened 3 weeks ago
0
move contaminant sequence detection to before collapsing duplicates

#355 ggabernet opened 3 weeks ago
0
modify pRESTO collapseseq process to keep UMI annotations

#354 ggabernet opened 3 weeks ago
0
Enhancements for TCR analysis (locus TR)

#353 ggabernet opened 3 weeks ago
0
Add UMI barcode diversity reporting

#352 ggabernet opened 3 weeks ago
0
Filtering sequences belonging to the loci specified in the samplesheet only

#351 ggabernet opened 3 weeks ago
0
Important! Template update for nf-core/tools v3.0.2

#350 nf-core-bot closed 2 weeks ago
0
Important! Template update for nf-core/tools v3.0.1

#349 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.0

#348 nf-core-bot closed 1 month ago
1
bump cellranger version

#347 mapo9 closed 1 month ago
1
include MiXCR toolkit in nf-core/airrflow

#346 mapo9 opened 1 month ago
4
find_threshold in enchantr_report with TCR data fails

#345 zhanyinx closed 3 weeks ago
2
Adding and simplifying MaskPrimers options

#344 ggabernet closed 2 weeks ago
1
New bulk 5'-RACE supported protocol, non-overlaping reads rescue

#343 JustBioinfo opened 3 months ago
0
New bulk 5'-RACE supported protocol, rescue non-overlaping reads and IgBlast 19 columns format

#342 JustBioinfo opened 3 months ago
0
Installation issues - airrflow pipeline

#341 pnatarajan9 closed 3 months ago
6
Incorrect number of sequences

#340 eba28 opened 4 months ago
0
Changeo additional output fields

#339 giulioisac closed 5 months ago
1
Apply PR review comments

#338 ggabernet closed 5 months ago
0
Release 4.1

#337 ggabernet closed 5 months ago
2
Immcantation version bump

#336 ggabernet closed 5 months ago
1
Fix report plots

#335 ggabernet closed 5 months ago
1
unselected RNA-seq based workflow

#334 mapo9 closed 4 months ago
3
Important! Template update for nf-core/tools v2.14.1

#333 nf-core-bot closed 5 months ago
0
Important! Template update for nf-core/tools v2.14.0

#332 nf-core-bot closed 6 months ago
1
Fastp sc

#331 mapo9 opened 6 months ago
1
Add the calculations of amino acid physicochemical properties from alakazam

#330 JustBioinfo closed 3 months ago
0
Fix test full profile

#329 ggabernet closed 6 months ago
0
Update germline reference parameters

#328 ggabernet closed 6 months ago
1
Revert changes test_full

#327 ggabernet closed 6 months ago
0
Add the calculations of physicochemical properties from alakazam

#326 JustBioinfo opened 6 months ago
0
Release 4.0.0

#325 mapo9 closed 6 months ago
1
Make RAxML default, use profile for full size test

#324 ggabernet closed 6 months ago
1
Error in value[[3L]](cond)

#323 rasmirnov closed 7 months ago
1
Automatic clone_threshold is 'NA'. Consider setting --clonal_threshold manually.

#322 petemeng closed 4 months ago
3
Dowser tips by isotype

#321 ggabernet closed 7 months ago
1
Minor release bugfix 3.3.1

#320 ggabernet closed 6 months ago
1
Minor bug fixes

#319 ggabernet closed 7 months ago
1
How to draw a similar flowchart in the Pipeline summary section

#318 LiuH2020 closed 7 months ago
1
Fix badges in master

#317 ggabernet closed 7 months ago
0
TRUST4 module

#316 mapo9 closed 6 months ago
3
Template Update + cellranger functionality

#315 mapo9 closed 7 months ago
1
Template update nf-core tools 2.13.1

#314 ggabernet closed 7 months ago
1
updated nih url to add nlm

#313 ssnn-airr closed 7 months ago
1
Add TRUST4 to nf-core/airrflow

#312 mapo9 closed 3 months ago
1
Bulk RNAseq pcr_target_locus specification

#311 loipf closed 7 months ago
1
Bump versions and update software versions

#310 ggabernet closed 8 months ago
2
AIRRflow error/fails at Dowser step

#309 margaretc-ho closed 7 months ago
3
Important! Template update for nf-core/tools v2.13.1

#308 nf-core-bot closed 7 months ago
0
URGENT: pin nf-validation version

#307 nvnieuwk closed 7 months ago
2