nf-core createtaxdb issues

nf-core / createtaxdb

Parallelised and automated construction of metagenomic classifier databases of different tools

https://nf-co.re/createtaxdb

MIT License

7 stars 4 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add support for KMCP databases

#53 jfy133 opened 1 month ago
1
Tool specific auxiliary files if missing will fail the pipeline, even if the tool is not activated

#52 jfy133 opened 1 month ago
0
add module parameters

#51 alxndrdiaz opened 1 month ago
9
Important! Template update for nf-core/tools v3.0.2

#50 nf-core-bot closed 1 month ago
1
Sync nf core template merge 3.0.1

#49 jfy133 closed 1 month ago
3
Nf core template merge 3.0.1

#48 jfy133 closed 1 month ago
1
Add skeleton for samplesheet generation

#47 jfy133 opened 1 month ago
5
Add running of nf-test for singularity and conda

#46 jfy133 opened 1 month ago
0
Important! Template update for nf-core/tools v3.0.1

#45 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.0

#44 nf-core-bot closed 1 month ago
4
Consider using nf-boost to clean up intermediate files from GUNZIP/CAT processes?

#43 jfy133 opened 1 month ago
0
General modules update

#42 jfy133 closed 1 month ago
1
Documentation outdated

#41 ChillarAnand closed 3 months ago
6
How to build standard databases?

#40 ChillarAnand closed 4 months ago
4
Add support for metacache db

#39 ChillarAnand opened 4 months ago
2
Add createtaxdb logo!

#38 jfy133 closed 6 months ago
1
Important! Template update for nf-core/tools v2.14.1

#37 nf-core-bot closed 6 months ago
2
Add KrakenUniq Build

#36 jfy133 closed 5 months ago
2
Important! Template update for nf-core/tools v2.14.0

#35 nf-core-bot closed 6 months ago
1
Update fasta_build_add_kraken2_bracken subworkflow

#34 alxndrdiaz closed 6 months ago
8
Krakenuniq build module emits lots of unnecessary files (including all the input FASTAss)

#33 jfy133 opened 6 months ago
2
Provide way to provide all optional parameter to each module

#32 jfy133 opened 6 months ago
5
Document with large warning of uncompressing of all FASTA files (because of Kraken2 and Centrifuge...)

#31 jfy133 opened 7 months ago
1
Add Kraken2 database build

#30 jfy133 closed 7 months ago
1
MALT will fail if too many FASTAs due to UNIX command limits

#29 jfy133 opened 8 months ago
11
Important! Template update for nf-core/tools v2.13.1

#28 nf-core-bot closed 7 months ago
2
Consider input genome quality before building

#27 jfy133 opened 8 months ago
3
Important! Template update for nf-core/tools v2.13

#26 nf-core-bot closed 8 months ago
1
Update README.md

#25 jfy133 closed 9 months ago
0
Docs section: input file descriptions

#24 jfy133 opened 9 months ago
1
FAAs files won't be prepared for MALT if protein sequences selected

#23 jfy133 opened 9 months ago
0
Add MALT build

#22 jfy133 closed 9 months ago
1
Add support for giving NCBI acc2tax files to MALT databases

#21 jfy133 opened 9 months ago
0
Important! Template update for nf-core/tools v2.12

#20 nf-core-bot closed 9 months ago
1
taxdump related files should be supplied as a directory not per file

#19 jfy133 opened 10 months ago
1
[BEFORE RELEASE] Rename to taxdbcreator?

#18 jfy133 opened 10 months ago
0
Important! Template update for nf-core/tools v2.11

#17 nf-core-bot closed 10 months ago
1
Consider database reduction options

#16 jfy133 opened 11 months ago
1
Generate taxprofiler samplesheet

#15 jfy133 opened 11 months ago
1
Add first two modules (diamond and kaiju), missing docs and tests

#14 jfy133 closed 10 months ago
5
Make Kraken2 build module

#13 jfy133 closed 7 months ago
4
Make centrifuge-build module

#12 jfy133 closed 9 months ago
1
Make centrifuge-download module

#11 jfy133 closed 7 months ago
1
Make bracken-build module

#10 jfy133 closed 7 months ago
2
Add all relevant modules

#9 jfy133 closed 6 months ago
0
Add ganon database build

#8 jfy133 opened 1 year ago
1
Add MALT database build

#7 jfy133 closed 9 months ago
1
Add KrakenUniq database build

#6 jfy133 closed 5 months ago
1
Add Kraken2 database build

#5 jfy133 closed 7 months ago
1
Add Kaiju database build

#4 jfy133 closed 10 months ago
0