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nf-core
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createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
https://nf-co.re/createtaxdb
MIT License
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How to build standard databases?
#40
ChillarAnand
closed
6 hours ago
2
Add support for metacache db
#39
ChillarAnand
opened
2 days ago
2
Add createtaxdb logo!
#38
jfy133
closed
1 month ago
1
Important! Template update for nf-core/tools v2.14.1
#37
nf-core-bot
closed
1 month ago
2
Add KrakenUniq Build
#36
jfy133
closed
1 month ago
2
Important! Template update for nf-core/tools v2.14.0
#35
nf-core-bot
closed
1 month ago
1
Update fasta_build_add_kraken2_bracken subworkflow
#34
alxndrdiaz
closed
1 month ago
8
Krakenuniq build module emits lots of unnecessary files (including all the input FASTAss)
#33
jfy133
opened
2 months ago
2
Provide way to provide all optional parameter to each module
#32
jfy133
opened
2 months ago
0
Document with large warning of uncompressing of all FASTA files (because of Kraken2 and Centrifuge...)
#31
jfy133
opened
2 months ago
0
Add Kraken2 database build
#30
jfy133
closed
2 months ago
1
MALT will fail if too many FASTAs due to UNIX command limits
#29
jfy133
opened
3 months ago
3
Important! Template update for nf-core/tools v2.13.1
#28
nf-core-bot
closed
3 months ago
2
Consider input genome quality before building
#27
jfy133
opened
4 months ago
3
Important! Template update for nf-core/tools v2.13
#26
nf-core-bot
closed
4 months ago
1
Update README.md
#25
jfy133
closed
4 months ago
0
Docs section: input file descriptions
#24
jfy133
opened
4 months ago
1
FAAs files won't be prepared for MALT if protein sequences selected
#23
jfy133
opened
5 months ago
0
Add MALT build
#22
jfy133
closed
5 months ago
1
Add support for giving NCBI acc2tax files to MALT databases
#21
jfy133
opened
5 months ago
0
Important! Template update for nf-core/tools v2.12
#20
nf-core-bot
closed
5 months ago
1
taxdump related files should be supplied as a directory not per file
#19
jfy133
opened
6 months ago
1
[BEFORE RELEASE] Rename to taxdbcreator?
#18
jfy133
opened
6 months ago
0
Important! Template update for nf-core/tools v2.11
#17
nf-core-bot
closed
6 months ago
1
Consider database reduction options
#16
jfy133
opened
6 months ago
1
Consider 'taxprofiler compatible' mode
#15
jfy133
opened
6 months ago
0
Add first two modules (diamond and kaiju), missing docs and tests
#14
jfy133
closed
6 months ago
5
Make Kraken2 build module
#13
jfy133
closed
2 months ago
4
Make centrifuge-build module
#12
jfy133
closed
4 months ago
1
Make centrifuge-download module
#11
jfy133
closed
2 months ago
1
Make bracken-build module
#10
jfy133
closed
2 months ago
2
Add all relevant modules
#9
jfy133
closed
2 months ago
0
Add ganon database build
#8
jfy133
opened
8 months ago
1
Add MALT database build
#7
jfy133
closed
5 months ago
1
Add KrakenUniq database build
#6
jfy133
closed
1 month ago
1
Add Kraken2 database build
#5
jfy133
closed
2 months ago
1
Add Kaiju database build
#4
jfy133
closed
6 months ago
0
Add DIAMOND database build
#3
jfy133
closed
6 months ago
0
Add centrifuge database build
#2
jfy133
closed
4 months ago
1
Add Bracken database build
#1
jfy133
closed
1 month ago
1