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nf-core
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eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
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Post release bump
#796
jfy133
closed
3 years ago
0
Test tsv to test
#795
jfy133
closed
3 years ago
1
Switch -profile test_tsv -> -profile test
#794
drpatelh
closed
3 years ago
0
Adapterremovalfixprefix sep
#793
jfy133
closed
3 years ago
1
AdapterRemovalFixPrefix piping hides error messages
#792
jfy133
closed
3 years ago
0
FIX: fix kraken file naming
#791
jfy133
closed
3 years ago
0
Kraken report results in file name collisions due to over-zealous suffix removal
#790
jfy133
closed
3 years ago
0
hostremoval_input_fastq has insufficient memory
#789
ivelsko
closed
2 years ago
4
Fix GATK memory specs and MVA add vcf files
#788
jfy133
closed
3 years ago
0
GATK genotyping commands missing memory definition
#787
jfy133
closed
3 years ago
0
Release PR for 2.4
#786
jfy133
closed
3 years ago
1
Info bump
#785
jfy133
closed
3 years ago
1
Update best practise defults and bam trimming defaults
#784
jfy133
closed
3 years ago
0
Java memory handling is suboptimal
#783
jfy133
closed
3 years ago
1
Improve BoeTiw2 output documentation
#782
jfy133
closed
3 years ago
0
Important! Template update for nf-core/tools v2.1
#781
nf-core-bot
closed
2 years ago
1
Add LC_Extrap mode for @robert-davidson
#780
jfy133
closed
3 years ago
1
coverage
#779
jfy133
closed
3 years ago
0
DSL2 Planning
#778
jfy133
opened
3 years ago
5
Important! Template update for nf-core/tools v2.0.1
#777
nf-core-bot
closed
3 years ago
1
Important! Template update for nf-core/tools v2.0
#776
KevinMenden
closed
3 years ago
1
Add PeerJ Badge
#775
jfy133
closed
3 years ago
2
Allow multi-threading of BowTie2 indexing
#774
jfy133
closed
2 years ago
0
Improve endogenous post description
#773
jfy133
closed
3 years ago
1
Remove leagacy schema entries
#772
jfy133
closed
3 years ago
1
`"default": "null" in schema should be removed
#771
jfy133
closed
3 years ago
0
Add MEGAN to use tools to make OTU table for MALT
#770
jfy133
closed
2 months ago
1
Addition of preseq's lc_extrap function
#769
roberta-davidson
closed
3 years ago
0
Add AR adapterList removal
#768
jfy133
closed
3 years ago
2
Major release wangen
#767
jfy133
closed
3 years ago
1
Dev into major release branch
#766
jfy133
closed
3 years ago
1
Add basic functionality for barcode trimming/fastq trimming
#765
jfy133
closed
3 years ago
2
Post release version bump
#764
jfy133
closed
3 years ago
2
Release PR for 2.3.5 patch
#763
jfy133
closed
3 years ago
2
Version bump for patch release prep
#762
jfy133
closed
3 years ago
1
Replace samtools -o with redirect for stability in CI test
#761
jfy133
closed
3 years ago
2
Software version fix
#760
jfy133
closed
3 years ago
2
Fix malformed software version regex
#759
jfy133
closed
3 years ago
1
Workflow summary fix
#758
jfy133
closed
3 years ago
2
Data type in MQC report is always "Paired End" for TSV input, regardless of SeqType in TSV.
#757
TCLamnidis
closed
3 years ago
1
Get latest dev into wangen base
#756
jfy133
closed
3 years ago
1
New logo for darkmode support
#755
jfy133
closed
3 years ago
13
Dev
#754
jfy133
closed
3 years ago
1
Fix specified CPUs in piped commands
#753
jfy133
closed
3 years ago
13
Get upstream fixes for tests to pass
#752
jfy133
closed
3 years ago
1
added missing label mc_small to mtnucratio
#751
alexandregilardet
closed
3 years ago
3
Fix number of CPUs in piped commands
#750
jfy133
closed
3 years ago
2
Get latest dev into bcftools branch
#749
jfy133
closed
3 years ago
1
Fix bedtools annotation file condition and re-add defaults
#748
jfy133
closed
3 years ago
2
Fix null validation
#747
jfy133
closed
3 years ago
0
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