issues
search
nf-core
/
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
148
stars
82
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
A problem with Eager at the DeDup level
#846
More92
closed
2 years ago
1
Re-add piping, and hope ARFP2 doesn't pipe errors into files anymore …
#845
jfy133
closed
2 years ago
2
PMDTools with masked reference is borked
#844
jfy133
closed
2 years ago
1
AdapterRemoval fixprefix hangs with large data
#843
jfy133
closed
2 years ago
0
Improve error message for metagenomic classification incorrect parameters
#842
jfy133
closed
2 years ago
1
Add step size to lc_extrap docs
#841
jfy133
closed
2 years ago
1
Remove deprecated parameters from test profiles
#840
jfy133
closed
2 years ago
1
Fix snpcapture_bed
#839
jfy133
closed
2 years ago
2
BED file for use with --snpcapture_bed not recognized
#838
meganemichel
closed
2 years ago
0
DSL2: Sex determination output sometimes listed on Sample, sometimes on library level
#837
stschiff
opened
2 years ago
1
test_full uses deprecated parameters
#836
jfy133
closed
2 years ago
0
Docs: preseq `preseq_step_size` parameter text is misleading.
#835
TCLamnidis
closed
2 years ago
0
Increase significance figures in general stats table
#834
neija2611
closed
1 year ago
4
DSL2 readprep
#833
jfy133
closed
2 years ago
3
Dsl2 refs
#832
jfy133
closed
2 years ago
2
DSL2: add indexing subworkflow
#831
jfy133
closed
2 years ago
6
Only load modules if being used
#830
jfy133
opened
2 years ago
1
Update sequenceTools
#829
stschiff
closed
2 years ago
1
Message for metagenomic screening not clear
#828
aidaanva
closed
2 years ago
1
Post release version bump
#827
jfy133
closed
2 years ago
0
Release PR for 2.4.2 patch
#826
jfy133
closed
2 years ago
2
Bedtools process changes
#825
TCLamnidis
closed
2 years ago
1
Large memory footprint in bedtools coverage process
#824
TCLamnidis
closed
2 years ago
2
Fix post-ar trimming not being included in downstream analyses
#823
jfy133
closed
2 years ago
1
Post adapter-removal trimmed files not merged into channel
#822
jfy133
closed
2 years ago
0
Allow input samplesheets to have additional metadata columns
#821
jfy133
closed
4 months ago
4
Failed to run the pipline. Got permission denied
#820
silvewheat
closed
2 years ago
1
Important! Template update for nf-core/tools v2.2
#819
nf-core-bot
closed
2 years ago
1
Wrong memory limit for some processes
#818
xhejtman
closed
9 months ago
4
Dsl2 samplesheet
#817
jfy133
closed
2 years ago
1
Version-bump
#816
TCLamnidis
closed
2 years ago
0
Keep read groups separate after merging
#815
dewawer
closed
2 years ago
2
PR for 2.4.1 release
#814
TCLamnidis
closed
2 years ago
1
Verision bump 2.4.1
#813
TCLamnidis
closed
2 years ago
0
Minor updates for 2.4.1
#812
jfy133
closed
2 years ago
0
Check that Read group changes work well with BAM input
#811
TCLamnidis
closed
2 years ago
1
Flexible filtering of reads for pileupcaller genotyping.
#810
TCLamnidis
closed
2 years ago
1
Retain read group info
#809
TCLamnidis
closed
2 years ago
2
Retain read group information in bam merging steps
#808
TCLamnidis
closed
2 years ago
0
Trim by lib
#807
TCLamnidis
closed
2 years ago
2
Update CHANGELOG.md
#806
TCLamnidis
closed
2 years ago
1
Flexible trimming by library strandedness.
#805
TCLamnidis
closed
2 years ago
0
Descriptions for cluster factor/Dups calculation
#804
meganemichel
closed
2 years ago
0
Underground diagram has mistake
#803
jfy133
closed
2 years ago
0
Set up fasta index preparation subworkflow. FIRST EAGER DSL2 COMMIT!
#802
jfy133
closed
2 years ago
4
CircularMapper should be a subworkflow
#801
apeltzer
closed
2 months ago
1
add krakenuniq as alternative to kraken 2
#800
ilight1542
closed
3 years ago
1
Add leeHom as alternative trimming/merging
#799
jfy133
closed
1 year ago
4
workflow staging and caching issues
#798
yassineS
closed
3 years ago
5
Chunking and stitching to parallelise alignment
#797
pontussk
closed
7 months ago
3
Previous
Next