nf-core rnafusion issues

nf-core / rnafusion

RNA-seq analysis pipeline for detection of gene-fusions

https://nf-co.re/rnafusion

MIT License

138 stars 93 forks source link

issues

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Pipeline gets stuck during reference building

#499 frenkiboy closed 1 week ago
1
A question about strandedness

#498 ValentineObrezanenko opened 1 week ago
0
Use quay.io as registry for all containers

#497 maxulysse opened 2 weeks ago
1
Add option to wget to ignore proxy certificates

#496 apeltzer closed 4 weeks ago
1
Arriba download -- proxy issues

#495 apeltzer opened 4 weeks ago
2
Error executing process

#494 zalsafwani closed 3 weeks ago
0
ARRIBA_VISUALISATION depends on STAR-FUSIOn rather than ARRIBA ?

#493 HCLbioinfo opened 1 month ago
0
Remove fusiongdb references in documentation

#492 rannick opened 2 months ago
0
update docs

#491 asp8200 closed 2 months ago
1
Tiny update of docs

#490 asp8200 closed 2 months ago
2
Error, no fusion contigs written at /usr/local/src/STAR-Fusion/FusionInspector/util/fusion_pair_to_mini_genome_join.pl

#489 HCLbioinfo opened 3 months ago
0
Add normalized gene expression

#488 rannick closed 3 months ago
1
Fusioninspector issue - strand GstrandBit problem

#487 APL-MolecularPathology opened 3 months ago
0
Important! Template update for nf-core/tools v2.14.1

#486 nf-core-bot closed 3 months ago
1
Important! Template update for nf-core/tools v2.14.0

#485 nf-core-bot closed 3 months ago
1
Update modules and use nf-core modules

#484 rannick opened 4 months ago
1
Release 3.0.2

#483 rannick closed 4 months ago
1
fix logical gate: when stringtie and not starfusion, only alignment i…

#482 rannick closed 5 months ago
1
Vcf fix2

#481 rannick closed 5 months ago
2
Merging 2.13.1

#480 rannick closed 5 months ago
1
Upgrade to nf-validation 2.0

#479 rannick opened 5 months ago
0
Fusioncatcher build fails

#478 apeltzer opened 5 months ago
6
Please pin the version of the `nf-validation` plugin!

#477 mirpedrol closed 5 months ago
1
Move previous tests for inputs into the format of template 2.13.1

#476 rannick opened 6 months ago
0
Pre-merging 2.13.1

#475 rannick closed 6 months ago
0
update collectrnaseqmetrics memory requirement

#474 rannick closed 5 months ago
3
Important! Template update for nf-core/tools v2.13.1

#473 nf-core-bot closed 5 months ago
1
Update local CollectRNASeqMetrics module -Xmx mem

#472 rndw closed 6 months ago
1
URGENT: pin nf-validation version

#471 nvnieuwk closed 6 months ago
4
Important! Template update for nf-core/tools v2.13

#470 nf-core-bot closed 6 months ago
0
Update STAR-Fusion

#469 rannick opened 6 months ago
0
vcf_collect fusion split error

#468 berguner closed 5 months ago
3
Fix vcf

#467 rannick closed 7 months ago
1
Fix bug using whitelist parameter

#466 rannick closed 7 months ago
2
Fix vcf

#465 rannick closed 7 months ago
3
Important! Template update for nf-core/tools v2.12

#464 nf-core-bot closed 7 months ago
1
fix starfusion download output for gtf to refflat

#463 dodslaser opened 7 months ago
1
error when using whitelist parameter

#462 ahwanpandey closed 5 months ago
0
Segmentation fault (core dumped) for fusion_catcher

#461 ZheFrench closed 5 months ago
1
Error in NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:VCF_COLLECT

#460 vwucher closed 5 months ago
3
Update module config

#459 fevac closed 6 months ago
2
fix vcf_collect when a tool is absent

#458 rannick closed 7 months ago
3
Important! Template update for nf-core/tools v2.11.1

#457 nf-core-bot closed 7 months ago
1
Important! Template update for nf-core/tools v2.11

#456 nf-core-bot closed 8 months ago
1
building reference with singularity profile

#455 nservant closed 5 months ago
8
Reason for removing SQUID and Pizzly in recent release.

#454 Joshuasync closed 8 months ago
1
Release 3.0.1

#453 rannick closed 9 months ago
1
Python3 tag is mandatory on some large scale cluster: local changes

#452 rannick closed 9 months ago
1
fix versions

#451 rannick closed 9 months ago
1
Python3 tag is mandatory on some large scale cluster

#450 aghozlane closed 9 months ago
2