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nf-core
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rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
https://nf-co.re/rnaseq
MIT License
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FIX: Keep only one samplesheetToList
#1406
maxulysse
closed
1 month ago
1
Fix bad variable name in subworkflow
#1405
pinin4fjords
closed
1 month ago
2
Restore the set -C when the concerned modules are fixed
#1404
maxulysse
opened
1 month ago
0
Fix bbmap website link (issue#1402)
#1403
J-Moravec
closed
1 month ago
2
Important! Template update for nf-core/tools v3.0.1
#1401
nf-core-bot
closed
1 month ago
1
java.nio.file.FileSystemException No space left on device
#1400
fjosefdz
closed
1 month ago
3
Important! Template update for nf-core/tools v3.0.0
#1399
nf-core-bot
closed
1 month ago
1
Back to dev
#1398
maxulysse
closed
1 month ago
1
Update nextflow_schema.json
#1397
rraadd88
opened
1 month ago
2
nf-core pipelines bump-version 3.17.0dev
#1396
maxulysse
closed
1 month ago
2
RC 3.16.0
#1395
maxulysse
closed
1 month ago
5
prepare RC 3.16.0
#1394
maxulysse
closed
1 month ago
6
patch bedtools/genomecov to use quay.io to solve issue with nf-core download
#1393
maxulysse
closed
1 month ago
2
samtools version error message
#1392
sci-kai
closed
1 month ago
1
Bedtool image
#1391
aheravi
closed
1 month ago
4
Helpful error message when strandedness cannot be infered
#1390
simoxb
closed
1 month ago
5
update animated subway map
#1389
maxulysse
closed
2 months ago
1
New module: Kraken2/Bracken on Unaligned Sequences for Contamination Detection
#1388
egreenberg7
closed
2 months ago
10
null path java error with all qc preprocessing skipping options enabled with revision 3.15.0
#1387
jos4uke
closed
1 month ago
1
nf-core pipelines bump-version 3.16.0dev
#1386
maxulysse
closed
2 months ago
2
Master merge
#1385
pinin4fjords
closed
2 months ago
1
Dev -> Master for 3.15.1
#1384
pinin4fjords
closed
2 months ago
1
Prerelease 3.15.1 version bumps
#1383
pinin4fjords
closed
2 months ago
2
Slight fixes for rnaseq preprocessing
#1382
pinin4fjords
closed
2 months ago
2
Massive conda modules update
#1381
maxulysse
closed
2 months ago
1
Fix issues with R modules changing sample names
#1380
pinin4fjords
closed
2 months ago
2
Improve pipeline level snapshots
#1379
maxulysse
closed
1 month ago
7
--extra_star_align_args
#1378
mtinti
closed
2 months ago
3
Pipeline fails if sample names have hyphens
#1377
pinin4fjords
closed
2 months ago
0
Fix invalid named parameter syntax
#1376
pditommaso
closed
2 months ago
4
RNAseq-3.14.0 Pipeline fails with aligner `star_rsem`
#1375
GerardTromp
closed
1 month ago
5
Bump pipeline version to 3.16.0dev
#1374
pinin4fjords
closed
2 months ago
3
Option to keep chimeric reads after UMI deduplication
#1373
siddharthab
opened
2 months ago
1
Bump tximeta/tximport for gene table row names fix
#1372
pinin4fjords
closed
2 months ago
1
Apply Maxime's changelog edits
#1371
pinin4fjords
closed
2 months ago
2
Bump versions for 3.15.0
#1370
pinin4fjords
closed
2 months ago
2
Add umicollapse as an alternative to umi-tools
#1369
siddharthab
opened
2 months ago
9
umicollapse
#1368
siddharthab
closed
2 months ago
1
Clarify design formula and blind dispersion estimation
#1367
pmoris
closed
2 months ago
1
Clarify docs on different tximport count files
#1366
pmoris
closed
2 months ago
2
Possible redundant rowname assignment in tximport.r
#1365
pmoris
closed
2 months ago
2
Hyphenated sample names causes downstream error
#1364
mniederhuber
closed
1 month ago
2
Fixing failing tests and updating modules once more
#1363
maxulysse
closed
2 months ago
1
Move multiqc module prefix for nf-test to module
#1362
pinin4fjords
closed
3 months ago
4
Animate subway map
#1361
maxulysse
closed
2 months ago
12
Snapshot all files (content or file name when not stable)
#1360
maxulysse
closed
2 months ago
2
Revert multiqc workaround
#1359
pinin4fjords
closed
3 months ago
2
Update test_full.config to restore a static URI for megatests
#1358
pinin4fjords
closed
3 months ago
1
Work around anchor issue in multiqc
#1357
pinin4fjords
closed
3 months ago
1
Improve qualimap execution time
#1356
PramodRaoB
opened
3 months ago
2
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