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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
244
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192
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Lint pipelines nextflow schema against the meta schema
#3288
mirpedrol
opened
2 weeks ago
0
Documentation shows the old commands without `pipelines` prefix
#3287
mirpedrol
opened
2 weeks ago
0
Values in comments are read when creating template for meta.yml from input options
#3286
zachary-foster
opened
3 weeks ago
0
download pipelines fails with some seqera containers
#3285
znorgaard
opened
3 weeks ago
4
Update python:3.12-slim Docker digest to 2a6386a
#3284
renovate[bot]
closed
3 weeks ago
1
Update codecov/codecov-action action to v5
#3283
renovate[bot]
closed
3 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.4
#3282
renovate[bot]
closed
3 weeks ago
2
linting fails to execute if "----" present in module patch diff file
#3281
znorgaard
opened
3 weeks ago
0
General: Run pre-commit when testing linting the template pipeline
#3280
mirpedrol
closed
3 weeks ago
0
General: Add hint to solve git errors with a synced repo
#3279
mirpedrol
closed
3 weeks ago
1
Allow skipping linting of specific subworkflows
#3278
mirpedrol
opened
3 weeks ago
0
Lint that module nf-tests use a single config with sourcing the args from params
#3277
mahesh-panchal
opened
3 weeks ago
0
handle new schema structure in `nf-core pipelines create-params-file`
#3276
mashehu
closed
4 weeks ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.3
#3275
renovate[bot]
closed
1 month ago
1
Gitpod miniforge
#3274
mahesh-panchal
closed
1 month ago
2
Single qutation mark ' in a comment makes AWS release full test break
#3273
jannikseidelQBiC
opened
1 month ago
2
Template: Add `gpu` profile
#3272
mashehu
opened
1 month ago
12
template: add `gpu` profile
#3271
mashehu
closed
1 month ago
3
Phase out the `when` directive
#3270
nictru
opened
1 month ago
0
Update base to use new previous task
#3269
edmundmiller
opened
1 month ago
0
Fix typo
#3268
SPPearce
closed
1 month ago
1
Fix logo typo in help message for create logos
#3267
jfy133
closed
1 month ago
2
Running prettier on new pipeline during `pipelines create` fails silently
#3266
awgymer
opened
1 month ago
0
3262 Fix pipeline lint bug for pipelines with minimal template features
#3265
awgymer
opened
1 month ago
0
CI Runs failing due to (potential) bug in utils method for fetching repo releases
#3264
awgymer
opened
1 month ago
0
Un-informative error message from strange linting runs
#3263
fasterius
closed
3 weeks ago
1
nf-core pipeline lint gives cryptic prettier error message
#3262
marrip
opened
1 month ago
7
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261
Joon-Klaps
opened
1 month ago
1
3257 - Add linkify version to fix bioconda dependencies
#3260
pmoris
closed
1 month ago
3
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3259
Joon-Klaps
opened
1 month ago
0
Provide novel tooling for regulatory needs
#3258
apeltzer
opened
1 month ago
1
ModuleNotFoundError for nf-core v3.0.2 installed from bioconda
#3257
pmoris
closed
1 month ago
4
1929: local modules use remote format from template
#3256
awgymer
opened
1 month ago
2
Template: Add resource limits to Gitpod profile
#3255
mahesh-panchal
closed
1 month ago
4
Pipeline creation should specify branch name when initialising git repository
#3254
alexlyttle
opened
1 month ago
0
nf-core pipelines bump-versions doesn't update .nf-core.yml
#3253
jfy133
closed
1 month ago
2
Template fails linting/pre-commit
#3252
alexlyttle
closed
3 weeks ago
1
nf-core modules create tool/subtool should make a main.nf in a subfolder of subtool in pipelines
#3251
mahesh-panchal
closed
1 month ago
2
Update pre-commit hook astral-sh/ruff-pre-commit to v0.7.1
#3250
renovate[bot]
closed
1 month ago
2
chore(deps): update github actions
#3249
renovate[bot]
closed
1 month ago
1
Modules meta.yml differentiate between tuple and single element channels
#3248
mirpedrol
opened
1 month ago
0
add `--dir/-d` option to schema commands
#3247
mashehu
closed
1 month ago
4
Modules: add a panel around diff previews when updating
#3246
mashehu
closed
1 month ago
9
nf-core pipelines bump-version doesn't consider skipped features
#3245
mashehu
opened
1 month ago
0
Download: Seqera container support - Patch 1
#3244
MatthiasZepper
closed
1 month ago
1
Adopt nf-test sharding
#3243
edmundmiller
opened
1 month ago
3
Seqera containers example
#3242
pinin4fjords
closed
1 month ago
1
Remove defaults conda channel from pipeline template
#3241
ktmeaton
closed
1 month ago
3
📦 Add new command nf-core rocrate to create a Research Object (RO) crate for a pipeline (continuation from #2680) [skip changelog]
#3240
mashehu
closed
1 week ago
2
Add a separater between each module's set of diffs during 'preview changes' during module updates
#3239
jfy133
opened
1 month ago
1
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