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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
241
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189
forks
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TEMPLATE: Parallelize pipeline GHA tests over docker/conda/singularity
#3214
maxulysse
closed
2 weeks ago
7
Linting: Fix bug when linting schema params
#3213
mirpedrol
closed
2 weeks ago
0
TEMPLATE: Fix version comment action
#3212
mashehu
closed
2 weeks ago
3
bump version to 3.0.2dev
#3211
mashehu
closed
2 weeks ago
0
mev -> main for 3.0.1
#3210
mashehu
closed
2 weeks ago
0
CI: fix artifact upload of snapshot report
#3209
mashehu
closed
3 weeks ago
0
update nf-core subworkflows [skip changelog]
#3208
mirpedrol
closed
2 weeks ago
0
Bump version to 3.0.1
#3207
mashehu
closed
2 weeks ago
2
fix more jinja newlines
#3206
mirpedrol
closed
3 weeks ago
0
Use correct key for parsing `defaultIgnoreParams`
#3205
mashehu
closed
3 weeks ago
0
fix too many empty lines added to .editorconfig file
#3204
mirpedrol
closed
3 weeks ago
0
Template: run awsfulltest only when target branch is `master`
#3203
mashehu
closed
3 weeks ago
0
Fix a typo in the linting action
#3202
nvnieuwk
closed
3 weeks ago
1
Fix comment section headers so they don't give phantom merge conflict warnings
#3201
jfy133
closed
3 weeks ago
7
Dev -> main
#3200
mashehu
closed
3 weeks ago
1
Release review [skip changelog]
#3199
mirpedrol
closed
3 weeks ago
0
`master` -> `main`
#3198
mashehu
closed
3 weeks ago
0
Dev -> Master for v3.0.0
#3197
mirpedrol
closed
3 weeks ago
1
bump version to 3.0.0
#3196
mirpedrol
closed
3 weeks ago
0
fix whitespaces in rendered template
#3195
mashehu
closed
3 weeks ago
0
add pipeline name as an optional sync input
#3194
mashehu
closed
3 weeks ago
0
Update python:3.12-slim Docker digest to af4e85f
#3193
renovate[bot]
closed
3 weeks ago
0
Vscode settings
#3192
ewels
opened
3 weeks ago
3
TEMPLATE: Add null/ to .gitignore
#3191
maxulysse
closed
2 weeks ago
1
fix template new lines
#3190
mirpedrol
closed
3 weeks ago
0
add API docs for .nf-core.yml
#3189
mashehu
closed
3 weeks ago
0
Fix run_prettier on rendered template
#3188
mashehu
closed
3 weeks ago
0
Investigate easing pain of v3 template sync
#3187
ewels
closed
3 weeks ago
3
Update gitpod/workspace-base Docker digest to 2cc134f
#3186
renovate[bot]
closed
3 weeks ago
1
Fix nf-core pipelines sync
#3185
mirpedrol
closed
3 weeks ago
0
Add and lint module Renovate comments
#3184
ewels
opened
1 month ago
0
Remove `for` loops from the pipeline template
#3183
bentsherman
closed
4 weeks ago
3
Pipeline template: Modify download test action to capture the number of containers
#3182
MatthiasZepper
closed
3 weeks ago
0
v3.0 release: Write a blog post
#3181
ewels
closed
3 weeks ago
1
Remove check_max() [skip changelog]
#3180
mirpedrol
closed
1 month ago
0
Download: Fix support for Seqera Community Containers
#3179
MatthiasZepper
opened
1 month ago
5
Changes to nf-core pipelines download CLI
#3178
MatthiasZepper
closed
4 weeks ago
7
bump nf-schema to v2.1.1 in the template
#3177
nvnieuwk
closed
1 month ago
3
Strip hyphens from hashtags for mastodon compatibiluty
#3176
jfy133
closed
1 month ago
4
Add ability to install a subworkflow composed nf-core and non-nfcore modules/subworkflows.
#3175
kenibrewer
opened
1 month ago
3
Add ability to install a nf-core module into a private module library
#3174
kenibrewer
opened
1 month ago
6
I get an error about the imp module in python12
#3173
kojix2
closed
1 month ago
2
Comment in 'nf-core create-params-file --show-hidden' indicates hidden parameters are missing. Params are there
#3172
FriederikeHanssen
opened
1 month ago
0
Template: add option to exclude the workflows directory from pipeline template
#3171
mirpedrol
closed
4 weeks ago
1
exclude CITATIONS.md file when excluding citations from pipeline template
#3169
mirpedrol
closed
4 weeks ago
0
Remove if/else block to include `igenomes.config` and add `igenomes_ignored.config`
#3168
mirpedrol
closed
1 month ago
0
Template: remove try-catch blocks from nextflow.config
#3167
mirpedrol
closed
4 weeks ago
1
Template: Update modules and and local subworkflow syntax
#3166
mirpedrol
closed
4 weeks ago
0
Remove `import` statements from pipeline template
#3165
ewels
closed
4 weeks ago
1
Update gitpod.Dockerfile
#3164
sateeshperi
closed
1 month ago
1
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