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nf-core
/
tools
Python package with helper tools for the nf-core community.
https://nf-co.re
MIT License
241
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190
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Add ability to install a subworkflow composed nf-core and non-nfcore modules/subworkflows.
#3175
kenibrewer
opened
1 month ago
3
Add ability to install a nf-core module into a private module library
#3174
kenibrewer
opened
1 month ago
6
I get an error about the imp module in python12
#3173
kojix2
closed
1 month ago
2
Comment in 'nf-core create-params-file --show-hidden' indicates hidden parameters are missing. Params are there
#3172
FriederikeHanssen
opened
1 month ago
0
Template: add option to exclude the workflows directory from pipeline template
#3171
mirpedrol
closed
1 month ago
1
exclude CITATIONS.md file when excluding citations from pipeline template
#3169
mirpedrol
closed
1 month ago
0
Remove if/else block to include `igenomes.config` and add `igenomes_ignored.config`
#3168
mirpedrol
closed
1 month ago
0
Template: remove try-catch blocks from nextflow.config
#3167
mirpedrol
closed
1 month ago
1
Template: Update modules and and local subworkflow syntax
#3166
mirpedrol
closed
1 month ago
0
Remove `import` statements from pipeline template
#3165
ewels
closed
1 month ago
1
Update gitpod.Dockerfile
#3164
sateeshperi
closed
2 months ago
1
Container cache download
#3163
muffato
opened
2 months ago
2
Singularity container symlinks not consistently created
#3162
muffato
opened
2 months ago
0
Don't test conda `environment.yml` `name` attribute
#3161
ewels
closed
2 months ago
2
error_retry label not recognized as standard label for certain module structures
#3160
Felix-Kummer
opened
2 months ago
2
Add --update-all flag to conda in Gitpod
#3159
mahesh-panchal
closed
2 months ago
1
nf-core pipelines bump-version command should update pipeline version in nf-test snapshots
#3158
maxulysse
opened
2 months ago
0
`modules update` with `patch` deletes files in `templates`
#3157
FriederikeHanssen
opened
2 months ago
1
Fix issue where tool and subtool have the same name
#3156
nvnieuwk
closed
2 months ago
1
Update pre-commit hook editorconfig-checker/editorconfig-checker.python to v3
#3155
renovate[bot]
closed
1 month ago
1
Update dependency pytest-textual-snapshot to v1
#3154
renovate[bot]
closed
1 month ago
3
chore(deps): update dependency textual-dev to v1.6.1
#3153
renovate[bot]
closed
1 month ago
2
Update dependency textual to v0.85.2
#3152
renovate[bot]
opened
2 months ago
0
Update pre-commit hook pre-commit/mirrors-mypy to v1.11.2
#3151
renovate[bot]
closed
1 month ago
1
Update pre-commit hook astral-sh/ruff-pre-commit to v0.6.9
#3150
renovate[bot]
closed
1 month ago
1
Template: test pipeline with conda and singularity on PRs to master
#3149
mirpedrol
closed
1 month ago
1
run `nf-core lint --release` on PRs to master
#3148
mirpedrol
closed
2 months ago
0
Linting: handle cases where the directory path contains the name of the component
#3147
mirpedrol
closed
2 months ago
0
what is 'getGenomeAttribute' and how can we use igenomes without it?
#3146
stevekm
closed
2 months ago
10
Schema: Support multi-line text inputs
#3145
ewels
opened
2 months ago
1
Release PR (dev to master) does not fail with a pipeline still on dev version
#3144
maxulysse
closed
2 months ago
0
fix syncing a pipeline from current directory
#3143
mirpedrol
closed
2 months ago
0
Allow `main` as default channel
#3142
mashehu
opened
2 months ago
1
Create pre-commit hooks
#3141
edmundmiller
opened
2 months ago
2
Pass a list of modules/subworkflows(files) to nf-core modules lint
#3140
edmundmiller
opened
2 months ago
0
Adopt pyproject.toml
#3139
edmundmiller
opened
2 months ago
2
Automating pytest migration
#3138
GallVp
opened
2 months ago
0
organise changelog and bump version to 3.0.0dev
#3137
mirpedrol
closed
2 months ago
0
Update gitpod
#3136
mahesh-panchal
closed
2 months ago
0
Add a linting test for the metro map
#3135
maxulysse
opened
2 months ago
0
Template: add option to exclude tower.yml from pipeline template
#3134
mirpedrol
closed
2 months ago
1
Template: add option to exclude test configs from pipeline template
#3133
mirpedrol
closed
2 months ago
0
Remove try-catch blocks around institutional configs
#3132
bentsherman
closed
1 month ago
14
Move igenomes config into pipeline code
#3131
bentsherman
closed
1 month ago
4
Template: add option to exclude documentation from pipeline template
#3130
mirpedrol
closed
2 months ago
5
Template: add option to exclude fastqc from pipeline template
#3129
mirpedrol
closed
2 months ago
0
Template: add option to exclude nf-core components from pipeline template
#3128
mirpedrol
closed
2 months ago
0
Template: add option to exclude adaptivecard and slackreport from pipeline template
#3127
mirpedrol
closed
2 months ago
0
Template: add option to exclude email from pipeline template
#3126
mirpedrol
closed
2 months ago
0
Template: add option to exclude license from pipeline template
#3125
mirpedrol
closed
2 months ago
0
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