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nf-core
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variantbenchmarking
A nextflow variant benchmarking pipeline - premature
https://nf-co.re/variantbenchmarking
MIT License
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7
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missing chain and rename_chr files
#112
kubranarci
opened
1 day ago
0
change oras with https for singularity
#111
kubranarci
opened
1 day ago
1
Can't download singularity containers for modules with `oras://`
#110
fellen31
opened
4 days ago
2
Broken link to truth info
#109
fellen31
opened
4 days ago
1
adding plots to multiqc
#108
kubranarci
opened
5 days ago
1
88 add plots and reports to multiqc
#107
kubranarci
opened
6 days ago
1
fixes in documentation
#106
kubranarci
closed
6 days ago
1
add nf-test files
#105
kubranarci
closed
1 week ago
2
add truth files into igenome
#104
kubranarci
opened
2 weeks ago
0
100 refactoring input truth files
#103
kubranarci
closed
2 weeks ago
1
Add an test case for rat
#102
kubranarci
opened
3 weeks ago
2
Detection of variant tools from vcf header
#101
kubranarci
opened
3 weeks ago
0
refactoring input truth files
#100
kubranarci
closed
2 weeks ago
0
52 use datavzrd to create reports that are usable with ncbench
#99
kubranarci
closed
4 weeks ago
0
update happy modules
#98
kubranarci
closed
1 week ago
0
rename bed file
#97
kubranarci
closed
2 weeks ago
0
somatic workflow
#96
kubranarci
opened
1 month ago
0
Release v1.0.0 requirements
#95
kubranarci
opened
1 month ago
0
Extensive testing of subworkflows
#94
kubranarci
closed
6 days ago
13
generate somatic test files for COLO-829
#93
kubranarci
opened
1 month ago
0
oncoliner assessment tool
#92
kubranarci
opened
1 month ago
0
Important! Template update for nf-core/tools v3.0.1
#91
nf-core-bot
closed
1 month ago
0
Important! Template update for nf-core/tools v3.0.0
#90
nf-core-bot
closed
1 month ago
1
add oncoliner tools
#89
kubranarci
opened
2 months ago
0
add plots and reports to MULTIQC
#88
kubranarci
opened
3 months ago
1
metromap file updated updated
#87
kubranarci
closed
3 months ago
0
add nf-test to CI
#86
kubranarci
closed
1 week ago
0
add test cases to CI
#85
kubranarci
closed
1 week ago
0
81 add nf test
#84
kubranarci
closed
3 months ago
0
pipeline test with stub
#83
kubranarci
closed
3 months ago
0
support for trio analysis for mendelian inheritance errors
#82
kubranarci
opened
3 months ago
0
add nf-test
#81
kubranarci
closed
3 months ago
0
add images
#80
kubranarci
closed
3 months ago
1
66 fullfill readme
#79
kubranarci
closed
3 months ago
0
77 add liftover option for truths
#78
kubranarci
closed
3 months ago
0
add liftover option for truths
#77
kubranarci
closed
3 months ago
0
44 add aws full test
#76
kubranarci
closed
3 months ago
0
71 add support for multi sample files
#75
kubranarci
closed
3 months ago
0
Refactor to increase readability
#74
nvnieuwk
closed
3 months ago
0
Updating the JSON schemas
#73
nvnieuwk
closed
4 months ago
0
Fix fixable warnings
#72
nvnieuwk
closed
4 months ago
0
add support for multi-sample files
#71
kubranarci
closed
3 months ago
0
46 add sv benchmarking for somatic
#70
kubranarci
closed
4 months ago
0
integrate module/snakemake
#69
kubranarci
opened
4 months ago
0
42 generate truthconfig
#68
kubranarci
closed
4 months ago
0
add nft-vcf
#67
kubranarci
closed
1 week ago
0
fullfill readme
#66
kubranarci
closed
3 months ago
0
coverage stratification
#65
kubranarci
opened
4 months ago
0
separate cnv benchmark
#64
kubranarci
closed
4 months ago
0
57 fix prepy + rtgtools eval comb
#63
kubranarci
closed
4 months ago
0
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