nh13 DWGSIM issues - Githubissues

nh13 / DWGSIM

Whole Genome Simulator for Next-Generation Sequencing

GNU General Public License v2.0

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issues

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Error while cloning the repository.

#89 doglasp opened 1 month ago
0
build failure with gcc 14

#88 emollier opened 2 months ago
0
Installation issue

#87 tnnandi closed 10 months ago
1
Incorrect insertions positions with VCF

#86 ChristopheLegendre opened 1 year ago
2
feat: the -M option now specifies the output type (reads, variants, o…

#85 nh13 opened 1 year ago
0
feat: add support for amplicons

#84 nh13 closed 1 year ago
0
how should I use DWGSIM to generate SNP in RNA data?

#83 SimoneRossi94 opened 1 year ago
1
How is read depth distributed across the genome?

#82 samsonweiner closed 1 year ago
2
The coverage at the end of the sequence is close to 0

#81 AlsoATraveler closed 1 year ago
1
Generating reads with even 10X coverage for WGS is taking too long

#80 tnnandi opened 1 year ago
1
vcf file in out files

#79 lovelycatZ opened 1 year ago
0
[doc] Migrate docs from wiki

#78 nh13 closed 2 years ago
0
update badges

#77 nh13 closed 2 years ago
0
[ci] use github actions to build and test

#76 nh13 closed 2 years ago
0
[feat] improve error message when the input BED is not coordinate sorted

#75 nh13 closed 2 years ago
0
[bugfix] -x fails to emit reads up to the end of the 3' target

#74 nh13 closed 2 years ago
0
Generation of reads only on the first gene of a fasta file

#73 SimoneRossi94 closed 2 years ago
2
Contig not found error when using the -x option with multiple bed lines

#72 gtollefson closed 2 years ago
2
Low read depth at start and end of sequence

#71 nick-pestell closed 2 years ago
8
installation problem

#70 as7a5 closed 2 years ago
3
How to generate quality score closing to NA12878.

#69 liyewen521 closed 2 years ago
1
dwgsim fails to emit reads at the 3' end of a `-x` target

#68 yfarjoun closed 2 years ago
2
dwgsim hangs when generating more than one contig's worth of data

#67 yfarjoun closed 2 years ago
1
Better error message for out of order contigs

#66 nh13 closed 3 years ago
0
DWGSIM is painfully slow for long reads

#65 snayfach closed 3 years ago
4
contig parsing in mut_txt.c required sorted input

#64 fbattke closed 3 years ago
1
Travis-ci: added support for ppc64le along with amd64

#63 sanjaymsh opened 4 years ago
4
-i / -d / -s outer distance ?

#62 jfourquet2 closed 3 years ago
3
-e and -E option

#61 jfourquet2 closed 3 years ago
2
Option -C

#60 jfourquet2 closed 3 years ago
2
No Ns into simulates reads

#59 jfourquet2 closed 3 years ago
1
-o option is missing in the conda version 1.11

#58 dangeles closed 2 years ago
5
Several Question (by, error rate)

#57 Freequilibrium closed 4 years ago
0
Enabling region of interest (-x <.bed>)

#56 quacksawbones closed 4 years ago
5
Problem with read names.

#55 StewartONeill closed 4 years ago
2
Adding an option to set the strand of read one

#54 nh13 closed 5 years ago
0
Make a release (0.1.13) and bump the version in bioconda

#53 nh13 closed 2 years ago
0
Various bug fixes

#52 nh13 closed 5 years ago
0
`-F` flag confusion

#51 multimeric closed 5 years ago
1
Does it support multithread mode? #Question

#50 afzm closed 6 years ago
1
The read name explanation is not clear

#49 bbsunchen closed 6 years ago
1
Failed to generate iontorrent data

#48 biocyberman closed 2 years ago
2
correct spelling mistake

#47 EdwardBetts closed 5 years ago
0
How to mark Quailty Score?

#46 studB closed 7 years ago
1
-H option

#45 IleaHeft closed 6 years ago
2
Issues creating variants with a vCF

#44 nh13 closed 7 years ago
8
Default Illumina quality scores are too low

#43 niemasd closed 7 years ago
2
Output FASTQs are gzipped by default.

#42 nh13 closed 7 years ago
0
Add the "-o" option to control which FASTQs are output.

#41 nh13 closed 7 years ago
0
Feature to create gzipped output files instead of plaintext

#40 niemasd closed 7 years ago
2