nimh-dsst abcd-fasttrack2bids issues

nimh-dsst / abcd-fasttrack2bids

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In pipeline.py, need a function to rename corrupt volume DICOM directory in scans.tsv

#27 ericearl opened 2 days ago
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Make pipeline.py stable for sessions without func data

#26 ericearl opened 4 days ago
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In bids_corrections.py, create a correction to remove SliceTiming from fMRI scans

#25 ericearl closed 5 days ago
1
In bids_corrections,py, auto-add the task-*_bold.json files at the rawdata BIDS root

#24 ericearl closed 5 days ago
1
In bids_corrections.py, correct IntendedFor field entries to be BIDS URIs

#23 ericearl closed 5 days ago
2
In bids_corrections.py, add a correction to calculate TotalReadoutTime

#22 ericearl closed 5 days ago
1
In bids_corrections.py, implement a correction to delete fmap/*.{bval,bvec}

#21 ericearl closed 5 days ago
1
Create a final tsv_collection.py stage

#20 ericearl opened 1 week ago
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Add troubleshooting steps to the README

#19 ericearl opened 1 week ago
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Make bids_corrections_log.tsv save safely across parallel runs

#18 ericearl closed 5 days ago
1
In bids_corrections.py, add DWI BVAL floating-point error rounding correction

#17 ericearl closed 5 days ago
1
Make bids_corrections.py report all changes made to one CHANGELOG

#16 ericearl closed 1 week ago
2
In fasttrack2bids.py, implement the --ignore feature to read from a BIDS folder to ignore what's already there

#15 ericearl opened 2 weeks ago
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Make bids_corrections.py use the rawdata folder for BIDS input and code/logs folder for logs

#14 ericearl closed 1 week ago
1
Add NDA download prep directions to the README.md

#13 ericearl opened 2 weeks ago
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In fasttrack2s3.py, add messages of warning/caution for the datatypes specifically

#12 ericearl opened 2 weeks ago
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Feature request: Ingest BIDS sidecar metadata from the DAIRC present in the unpacked TGZs

#11 ericearl opened 2 weeks ago
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Add a flag to fasttrack2bids.py to optionally run bids-validator on the output BIDS directory

#10 ericearl opened 2 weeks ago
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Don't halt pipeline.py if a single session series fails to convert

#9 ericearl opened 2 weeks ago
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In pipeline.py, log when a "corrupt volume" is removed from any DICOM series

#8 ericearl opened 2 weeks ago
4
Assess differences and similarities between fasttrack2bids.py and DCAN-Labs/abcd-dicom2bids

#7 ericearl opened 2 weeks ago
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Make fasttrack2s3.py, pipeline.py, and bids_corrections.py log to a file rather than stdout

#6 ericearl closed 1 week ago
1
Make fasttrack2s3.py able to filter by ftq_* fields

#5 ericearl opened 2 weeks ago
0
Parallelize bids_corrections.py

#4 ericearl closed 1 week ago
1
Give fasttrack2bids.py a --swarm option

#3 ericearl closed 1 week ago
1
Fill in README.md with resource request guidance for pipeline.py

#2 ericearl opened 2 weeks ago
0
Test README.md installation instructions

#1 ericearl opened 2 weeks ago
0