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nrbennet
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dl_binder_design
MIT License
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runlist no output
#42
jelka71
closed
11 months ago
1
af2_complex_error
#41
pedrovaliente79
closed
11 months ago
2
af2_complex running error
#40
pedrovaliente79
closed
11 months ago
1
Conda environment setup does not work
#39
brystingjosephine
closed
11 months ago
1
RuntimeError: jaxlib/cusolver.cc:51: operation cusolverDnCreate(&handle) failed: cuSolver internal error
#38
SupermeCJ
closed
11 months ago
1
Structure with tag designed_tag failed in 0 seconds with error: <class 'IndexError'>
#37
Deoyeh
opened
1 year ago
3
for symmetric multimers
#36
jongseo-park
closed
11 months ago
1
Add force_monomer option to predict.py
#35
nrbennet
closed
1 year ago
0
Force monomer
#34
nrbennet
closed
1 year ago
0
GPU error: Segmentation fault (core dumped)
#33
ning-2022
closed
11 months ago
3
Deep Learning Binder Results
#32
okanders
opened
1 year ago
2
tensorflow 2.12.1 requires jax>=0.3.15
#31
frankligy
closed
11 months ago
2
More than two chains?
#30
okanders
opened
1 year ago
2
Jupyter notebook available?
#29
slives-lab
closed
11 months ago
1
Adapting initial guess without Rosetta
#28
okanders
closed
11 months ago
1
How to set seqs_per_struct >=2 when relax_cycles =1 ?
#27
Samuel-gwb
closed
11 months ago
3
Major Refactor
#26
nrbennet
closed
1 year ago
0
Question about AlphaFold initial guess
#25
sangzhe
opened
1 year ago
0
Why can't GPU be used for inference?
#24
aw10279
closed
11 months ago
1
Fixed Issue with ProteinMPNN-FR Tag Numbering
#23
nrbennet
closed
1 year ago
0
interfaceAF2predict.py
#22
yebinase
opened
1 year ago
1
Possible relax protocol issue
#21
data2code
opened
1 year ago
0
pyjd2 in silentfrompdb
#20
youngh81
closed
1 year ago
3
IndexError in dl_interface_design.py
#19
hklz
opened
1 year ago
0
Bug fix to fixed res args. C now excluded from MPNN FR design by default.
#18
nrbennet
closed
1 year ago
0
Fix to bug in fixed res argument
#17
nrbennet
closed
1 year ago
0
Running without silent tools?
#16
jvenderley-lilly
closed
1 year ago
1
Fixing residues of binder chain in ProteinMPNN
#15
alllirik
closed
1 year ago
1
Several Bug Fixes
#14
nrbennet
closed
1 year ago
0
issue with silentfrompdbs
#13
JA-Hull
closed
1 year ago
1
Some questions about pdb_interfaceAF2predict.py
#12
LDAIprotein
opened
1 year ago
2
How to use the '-fix_FIXED_res' parameter in the dl_interface_design_multi_seq.py
#11
Lyang556
closed
1 year ago
7
Add multi seq MPNN script
#10
nrbennet
closed
1 year ago
0
Add writing of per-residue plddt to af2 scripts
#9
nrbennet
closed
1 year ago
0
Column concatenation in .pdb file when residue index > 999
#8
alllirik
closed
1 year ago
2
Issue with silent file index
#7
arikat
closed
1 year ago
2
Error when using silent tools
#6
Samuel-gwb
closed
1 year ago
0
Change some functions in AF2 to allow for use with newer versions of JAX
#5
nrbennet
closed
1 year ago
0
Running with alternate AF2 models
#4
swanss
closed
1 year ago
2
-checkpoint_path
#3
gha2012
closed
1 year ago
6
For dl_interface_design.py
#2
Lyang556
closed
1 year ago
1
for interfaceAF2predict.py
#1
jongseo-park
closed
1 year ago
2
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