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ntanmayee
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decoden
🌊 Analyse experimental conditions and replicates jointly to remove cell-type specific bias in multi-condition ChIP-Seq
GNU General Public License v3.0
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decoden detect fails while parsing experiment_conditions.json
#33
jamesabbott
opened
2 months ago
0
Bump zipp from 3.18.1 to 3.19.1
#32
dependabot[bot]
closed
3 months ago
0
Bump certifi from 2024.2.2 to 2024.7.4
#31
dependabot[bot]
closed
3 months ago
0
Bump scikit-learn from 1.4.1.post1 to 1.5.0
#30
dependabot[bot]
closed
4 months ago
0
Bump urllib3 from 2.2.1 to 2.2.2
#29
dependabot[bot]
closed
4 months ago
0
Function `get_fragment_length` extracts the tag size instead of the fragment length
#28
gvisona
opened
5 months ago
0
Bump requests from 2.31.0 to 2.32.0
#27
dependabot[bot]
closed
5 months ago
0
Write processed read in feather format
#26
ntanmayee
opened
6 months ago
0
Upgrade from MACS2 to MACS3
#25
ntanmayee
opened
6 months ago
0
Edits to README
#24
ntanmayee
opened
6 months ago
1
Installation fails without some tweaks...
#23
jamesabbott
opened
6 months ago
1
Bump jinja2 from 3.1.3 to 3.1.4
#22
dependabot[bot]
closed
6 months ago
0
Bump tqdm from 4.66.2 to 4.66.3
#21
dependabot[bot]
closed
6 months ago
0
`config.json` is empty
#20
ntanmayee
closed
5 months ago
1
Cl refactor
#19
ntanmayee
closed
6 months ago
0
Bump idna from 3.6 to 3.7
#18
dependabot[bot]
closed
7 months ago
0
Input smooth
#17
ntanmayee
closed
7 months ago
0
Bump pillow from 10.2.0 to 10.3.0
#16
dependabot[bot]
closed
7 months ago
0
Data Correlation Heatmap
#15
ntanmayee
opened
7 months ago
0
`deeptools` `countReadsPerBin` output is not sorted
#14
ntanmayee
closed
8 months ago
2
Bump pillow from 10.1.0 to 10.2.0
#13
dependabot[bot]
closed
9 months ago
0
Preprocess
#12
ntanmayee
closed
11 months ago
0
Installation problems
#11
ntanmayee
closed
6 months ago
1
`poetry` needs to be installed before running DecoDen
#10
ntanmayee
closed
8 months ago
1
sklearn warnings
#9
MarekGierlinski
opened
1 year ago
1
Missing HSR_results.ftr file
#8
MarekGierlinski
closed
1 year ago
1
Missing --conditions argument leads to an obscure error
#7
MarekGierlinski
closed
1 year ago
0
Default argument values contain hardcoded paths
#6
MarekGierlinski
closed
1 year ago
0
Does not work with chromosome names 1, 2, 3, ...
#5
MarekGierlinski
closed
8 months ago
1
pd.read_csv warnings
#4
MarekGierlinski
closed
1 year ago
1
Usage for run_decoden with no arguments
#3
MarekGierlinski
closed
1 year ago
1
Misconfiguration in `run_decoden.py`
#2
ntanmayee
closed
2 years ago
0
Multiprocessing for preprocessing is not working
#1
ntanmayee
closed
11 months ago
1