nvnieuwk nft-bam issues - Githubissues

nvnieuwk / nft-bam

An nf-test plugin for reading the contents of SAM/BAM/CRAM files in assertions

https://nvnieuwk.github.io/nft-bam/

MIT License

6 stars 2 forks source link

issues

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Check if Bams are sorted or not

#19 edmundmiller opened 6 days ago
1
Plugin'nft-bam' found, but version 0.5.0 not found.

#18 gloubsi closed 3 weeks ago
7
Add S3 support for reference in `bam()`

#17 Joon-Klaps closed 4 weeks ago
0
add gitpod.yml file & .pre-commit

#16 Joon-Klaps closed 1 month ago
0
updated usage.md to make use of sam() and cram() more clear

#15 dunja-kuzmanconsulting closed 3 weeks ago
1
Adding totalDuplicateReads count for getStatistics()

#14 Joon-Klaps closed 1 month ago
0
Add dupReadCounts info to getStatistics() output

#13 gloubsi closed 1 month ago
1
Add support for s3 files

#12 maxulysse closed 4 weeks ago
0
Make the use of `sam()` and `cram()` more clear

#11 nvnieuwk closed 4 weeks ago
0
Add a statistics summary option

#10 nvnieuwk closed 1 month ago
0
read count

#9 koen-swaerts closed 1 month ago
2
Add a general stats method

#8 nvnieuwk closed 1 month ago
1
fix `getSamLinesMD5` in usage.md

#7 MarieLataretu closed 3 months ago
0
java.lang.IllegalArgumentException: argument type mismatch when trying to read a bam

#6 stkgo closed 3 months ago
5
"dev" docs are misleading

#5 edmundmiller closed 3 months ago
2
Add validation stringency

#4 nvnieuwk closed 4 months ago
0
SAM validation error

#3 fellen31 closed 4 months ago
15
Feat/hashing

#2 nvnieuwk closed 5 months ago
0
Add hash calculation

#1 SPPearce closed 5 months ago
3