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obophenotype
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ncbitaxon
Build for NCBITaxon
BSD 3-Clause "New" or "Revised" License
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Delete taxslim.obo
#63
matentzn
closed
2 years ago
0
Add taxslim.json
#62
matentzn
closed
2 years ago
0
Create subsets for domains (bacteria, archaea, eukaryotes) and a subset for all viruses
#61
cmungall
opened
2 years ago
0
Rank "forma specialis" is left as URL identifier in ncbitaxon.obo
#60
vmedea
closed
1 year ago
3
Adding new taxon IDs to taxslim. Adding an ID for every taxon that can be a causative agent in an infectious disease, according to Mondo axiomatizations.
#59
cmungall
closed
2 years ago
0
reorder of subset ids; no semantic changes
#58
cmungall
closed
2 years ago
0
No synonyms added if name = environmental samples #56
#57
hrshdhgd
closed
1 year ago
1
All environmental samples have an exact synomym "environmental samples"
#56
cmungall
closed
17 hours ago
11
Consider a non-isomorphic mappings to NCBI Taxon database
#55
cmungall
opened
3 years ago
1
docs for GCIs
#54
cmungall
closed
3 years ago
1
for discussion: create nodes for ancestral species
#53
cmungall
opened
3 years ago
3
NCBITaxon should have a gz release
#52
matentzn
closed
9 months ago
1
Build a subset that excludes all taxa below species rank
#51
jamesaoverton
closed
2 years ago
3
Docs: Inject web page link into header & Document differences to UMLS/BioPortal rendering
#50
cmungall
opened
3 years ago
1
Adding obo json. fixes #48
#49
cmungall
closed
3 years ago
0
Would be very useful to have an obo json format for NCBItaxon
#48
realmarcin
closed
3 years ago
1
What are GC_IDs?
#47
cthoyt
opened
3 years ago
4
Fix link to CI (no longer bbop, now monarch)
#46
cmungall
closed
3 years ago
0
Provide standard place for union taxa
#45
cmungall
opened
3 years ago
7
Partially obsoleted term NCBITaxon_1170837 clinocardium californiense
#44
ddooley
opened
3 years ago
2
Add xrefs and subsets of uniprot reference proteomes to ncbitaxon build
#43
cmungall
opened
3 years ago
0
There is no single NCBITaxon term for influenza virus
#42
yongqunh
opened
3 years ago
3
taxonomic rank has a weirdly shaped iri
#41
matentzn
closed
3 years ago
2
Make NCBI:txid identifiers secondary ids in the ontology?
#40
sierra-moxon
opened
4 years ago
6
Make new release
#39
matentzn
closed
2 years ago
0
Make sure all released files have version IRIs
#38
matentzn
closed
17 hours ago
0
Travis Job - should it run or not?
#37
matentzn
opened
4 years ago
2
Changing purls to GitHub and Release plan
#36
matentzn
opened
4 years ago
9
WIP: Update Makefile
#35
matentzn
closed
4 years ago
0
Enhance Python code for subset extraction
#34
jamesaoverton
opened
4 years ago
0
Include obsolete taxa
#33
jamesaoverton
opened
4 years ago
0
Reimplement in Python
#32
jamesaoverton
closed
4 years ago
8
Create Jenkinsfile
#31
jamesaoverton
closed
4 years ago
1
upstream EBI dump is stale
#30
cmungall
closed
4 years ago
34
Check OBO Dashboard results
#29
cmungall
opened
4 years ago
2
Usage question about 'in Taxon'
#28
ddooley
closed
4 years ago
4
Add license to ontology header
#27
cmungall
closed
1 year ago
1
Change downloads to HTTP
#26
balhoff
closed
4 years ago
0
Reorder taxon subset file.
#25
balhoff
closed
4 years ago
0
Add taxa requested by Monarch. Replaces PR #16.
#24
balhoff
closed
4 years ago
0
See if curl can fix intermittent connection issues to EBI
#23
balhoff
closed
4 years ago
0
Merge master
#22
balhoff
closed
4 years ago
0
Merge master
#21
balhoff
closed
4 years ago
0
Merge master
#20
balhoff
closed
4 years ago
0
Switch to openjdk due to licensing issue on travis
#19
balhoff
closed
4 years ago
0
Terms requested by ZFIN. Fixes #7
#18
balhoff
closed
4 years ago
0
Add 767769
#17
balhoff
closed
4 years ago
0
taxa for monarch
#16
kshefchek
closed
4 years ago
1
Added drosophila melanogaster and Xenopus taxons
#15
matentzn
closed
4 years ago
0
needs license information
#14
rvita
closed
5 years ago
7
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