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ogotoh
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spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
GNU General Public License v2.0
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Segmentation fault
#79
GenevieveKrause
opened
1 day ago
1
Glitches in GFF3 match format output (-O2)
#78
ohdongha
opened
1 week ago
1
spaln v3 instruction to align protein sequences to a genome
#77
ohdongha
closed
1 week ago
4
Multiple thread not working!
#76
xiekunwhy
opened
3 weeks ago
5
enhance `configure` script to give up when unknown option is used (+ keep accepting '`--alndbs_dir <path>`' without `=`)
#75
boegel
closed
1 month ago
1
configure script loops forever when unknown option is used
#74
boegel
closed
1 month ago
4
[Feature request] Prebuild package and make available with Conda
#73
jolespin
opened
2 months ago
1
A question about the contents of table directory
#72
Abieskawa
closed
2 months ago
1
spaln crashes with FORTIFY_SOURCE=3
#71
LocutusOfBorg
opened
2 months ago
5
Signed char
#70
martin-g
closed
7 months ago
0
Support Linux aarch64 via sse2neon
#69
martin-g
opened
7 months ago
1
Add CI based on Github Actions
#68
martin-g
opened
7 months ago
0
Build failure on Linux ARM64
#67
martin-g
opened
7 months ago
20
MAKEFILE ERROR
#66
karthickbrlab
opened
7 months ago
1
Update Makefile.in: harden binaries with RELRO mitigations
#65
kbipinkumar
opened
1 year ago
0
core dumped
#64
minjinhan
opened
1 year ago
5
Amino acid J?
#63
andreaswallberg
opened
1 year ago
1
Making species specific table
#62
jwasmuth
closed
1 year ago
3
Build issue under arch linux: support for `DESTDIR` flags in `make install`
#61
kbipinkumar
opened
1 year ago
5
Format of target name
#60
dariober
closed
1 year ago
1
sortgrcd leads to `free(): invalid size`
#59
tillea
opened
1 year ago
2
cannot convert ‘gzFile’ {aka ‘gzFile_s*’} to ‘FILE*’
#58
tillea
closed
1 year ago
2
Spaln crashed when mapping mouse proteins to the human genome
#57
lh3
closed
2 years ago
12
building with g++ and -march=native fails because of missing header files like fwd2s1_simd.h
#56
boegel
opened
2 years ago
2
spaln-produced mRNA is longer than the scaffold on which it sits
#55
vicenciooostra
opened
2 years ago
1
Basic use of proteins to genome alignment
#54
dariober
opened
2 years ago
2
Not configuring ? taking a longer time
#53
sunnyEV
opened
2 years ago
4
Extremely long introns.
#52
xiekunwhy
closed
1 week ago
13
Block table may be destroyed
#51
cfz1998
opened
2 years ago
3
Add an option to overwrite existing results.
#50
xiekunwhy
closed
2 years ago
11
What things in .erd, .grd and .qrd file?
#49
xiekunwhy
closed
2 years ago
1
Almost all spaln mRNA without the final stop codon
#48
xiekunwhy
closed
3 weeks ago
6
Request to point out to SPALN executable
#47
turningbrain
closed
2 years ago
2
Segmentation fault in command line parsing
#46
tillea
opened
2 years ago
7
Database not found. Specify database! error
#45
mickey-spongebob
closed
2 years ago
2
Any ways to avoid or fix stop codon in spaln out put?
#44
xiekunwhy
closed
2 years ago
2
Spaln for mitochondrial annotation
#43
sanyalab
closed
3 years ago
2
Question on job parallelization
#42
tamuanand
opened
3 years ago
3
Segmentation fault (core dumped)
#41
gill0110
opened
3 years ago
7
Update Makefile.in
#40
ljyanesm
opened
3 years ago
0
short gene for spaln output
#39
fangdm
opened
3 years ago
4
about the -O1 output
#38
ljl000
opened
3 years ago
1
Short sequences
#37
RamilNurtdinov
closed
3 years ago
2
negative coordinates in spaln output gff
#36
vicenciooostra
opened
3 years ago
14
Understanding -Q options (missing mappings)
#35
marchoeppner
closed
3 years ago
1
Zlib non-optional
#34
marchoeppner
closed
4 years ago
1
Compilation Spaln throws error "makdbs.h: No such file or directory"
#33
marchoeppner
closed
4 years ago
1
Spaln error "invalid next size"
#32
marchoeppner
closed
4 years ago
2
Question: Is SPALN aware of soft-masked repeats?
#31
marchoeppner
closed
4 years ago
1
Output consolidation
#30
garfield39
opened
4 years ago
1
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