ohsu-comp-bio cwl-tes issues

ohsu-comp-bio / cwl-tes

cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.

Apache License 2.0

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issues

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Feedback for CWL v1.2.1 requested

#63 acoleman2000 opened 1 year ago
0
V0.4.0 remove outdir

#62 sofiakarb closed 1 year ago
0
Added basic auth credentials for Funnel

#61 zagganas closed 2 years ago
1
[WIP] Updating links to newer cwl-tool and cwl1.2

#60 kellrott opened 2 years ago
0
V0.4.0 [WIP]

#59 kellrott opened 2 years ago
0
Upgraded version of cwltool to 3

#58 zagganas opened 2 years ago
3
S3 support ported from PR#38

#57 aniewielska closed 2 years ago
0
Merging update branches

#56 kellrott closed 2 years ago
0
Starting to convert Travis-CI operations to Github actions

#55 kellrott closed 2 years ago
0
Disabling JWT audience validation

#54 uniqueg closed 2 years ago
1
Output directories downloaded as text files

#53 uniqueg opened 3 years ago
0
Only download required input files

#52 uniqueg opened 3 years ago
0
Option to retry a task when execution fails

#51 uniqueg opened 3 years ago
1
GA4GH Tool Registry Service with cwl-tes support

#50 superbsky opened 3 years ago
0
Expanding S3/GS support [WIP]

#49 kellrott opened 3 years ago
0
Updating testing

#48 kellrott closed 3 years ago
0
Fix isfile

#47 manabuishii closed 4 years ago
2
Fix to add path to listdir result

#46 manabuishii closed 4 years ago
4
Wrong input when using directory type in tests

#45 lvarin opened 4 years ago
1
maxCores set to local CPU count

#44 mr-c opened 4 years ago
2
allow weak ciphers, if needed

#43 mr-c opened 4 years ago
10
Recent FTP changes cause an error for glob outputs with *

#42 aniewielska opened 4 years ago
3
AWS support

#41 kmavrommatis opened 4 years ago
2
(Try to) Fix tests, drop Python 2.7, 3.5; add 3.8

#40 jvkersch closed 4 years ago
0
weird patches to make things work with mac docker

#39 jjenthought closed 4 years ago
2
ENH: S3 backend

#38 jvkersch opened 4 years ago
4
FTP has issues with username & password on non-secure protocol

#37 Dabrill closed 4 years ago
0
Use hostname instead of netloc when connecting to FTP?

#36 jvkersch closed 4 years ago
0
Option to connect to insecure FTP?

#35 jvkersch closed 4 years ago
0
AWS s3 support

#34 kmavrommatis opened 4 years ago
8
Added importable function to use in external python modules

#33 medcelerate opened 5 years ago
4
V0.3.0

#32 adamstruck closed 5 years ago
1
Get error argument required when trying to submit

#31 medcelerate opened 5 years ago
2
Fix travis-ci errors

#30 adamstruck closed 5 years ago
1
Oauth support

#29 uniqueg closed 5 years ago
7
Move cwl-tes repo to a different organization?

#28 mr-c closed 5 years ago
17
Add support for OAuth2 Bearer tokens

#27 juhtornr closed 5 years ago
2
cwl-tes execution to remote server

#26 fgypas opened 6 years ago
5
WIP: initial support for ftp locations

#25 mr-c closed 6 years ago
26
running system tools with cwl-tes

#24 gunjanhariani closed 6 years ago
2
Don't preserve PATH environment variable by default

#23 mr-c closed 6 years ago
0
Switch to Python 3.6 or 3.7?

#22 mr-c closed 3 months ago
4
[WIP] freshen cwltool, cwltest versions

#21 mr-c closed 6 years ago
5
Input download not supported by storage

#20 azat-badretdin closed 6 years ago
3
feature: use tox for testing

#19 psafont closed 6 years ago
9
How to run the nose tests?

#18 psafont closed 6 years ago
2
Which funnel version?

#17 jasper1918 closed 6 years ago
4
updates to use new cwltool code and bump funnel version for testing

#16 adamstruck closed 6 years ago
7
cwltool version 1.0.20180108222053

#15 adamstruck closed 6 years ago
0
Support TES v0.3

#14 adamstruck closed 7 years ago
0