issues
search
ole-tange
/
barmaids
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
bammds_intersect dying with correct bam and mike files
#50
morenomayar
closed
10 years ago
10
population information: allow for a 1000G like file?
#49
sapfo
closed
11 years ago
4
requirements: explain how to install vcftools, plink, samtools
#48
sapfo
closed
10 years ago
2
bammds: create a manual
#47
sapfo
closed
10 years ago
6
bammds_filleout: Should not depend on Text::CSV
#46
ole-tange
closed
11 years ago
1
Determine which files are actually in use
#45
ole-tange
closed
11 years ago
1
Test that it works without a bam file (only with a tped).
#44
sapfo
closed
11 years ago
1
Generated files: Where to put and what to call?
#43
ole-tange
closed
11 years ago
3
bammds: do not overwrite legend file
#42
ole-tange
closed
11 years ago
1
bammds_plot.r: Summary page should say which legend file is used
#41
ole-tange
closed
11 years ago
1
bammds: Warning when using cached .asd file
#40
ole-tange
closed
11 years ago
1
bammds: Specify which legend file to use
#39
ole-tange
closed
11 years ago
1
bammds: Fail if the quality score filter (defined by the user) is above 40.
#38
sapfo
closed
11 years ago
1
Email everyone...again
#37
sapfo
closed
11 years ago
0
Convert the system to a webservice
#36
ole-tange
closed
10 years ago
3
Missing eigenvalues
#35
ole-tange
closed
10 years ago
9
Deal better with legend for a 1000 indivs
#34
ole-tange
closed
11 years ago
1
Swap pop and indv plots
#33
ole-tange
closed
11 years ago
2
Output coordinates of points in a csv file
#32
ole-tange
closed
11 years ago
1
MDS/PCA/procrustes theory.
#31
sapfo
opened
11 years ago
1
Output key values
#30
sapfo
closed
11 years ago
10
1000 genome
#29
sapfo
closed
11 years ago
2
Sample name on the legend of the pdf
#28
sapfo
closed
11 years ago
1
bammds: Output file name
#27
sapfo
closed
11 years ago
2
Allow for more output formats for the plot.
#26
sapfo
closed
11 years ago
1
Find test files for non humans.
#25
sapfo
closed
10 years ago
2
Lifting over data
#24
ole-tange
closed
11 years ago
3
Test VCF on known data
#23
ole-tange
closed
11 years ago
1
Find VCF-file with population information
#22
ole-tange
closed
11 years ago
2
Check the par merge for that line of code.
#21
sapfo
closed
11 years ago
1
wishlist from users. OLD
#20
sapfo
closed
11 years ago
0
Generate dummy bam file
#19
ole-tange
closed
11 years ago
2
Allow for numerical values in the pch (makeMDSplot)
#18
sapfo
closed
11 years ago
1
Write on screen name of pdf outputted (in the makemdsplot R script)
#17
sapfo
closed
11 years ago
1
email to send to the others
#16
sapfo
closed
11 years ago
0
(T)PED file
#15
ole-tange
closed
11 years ago
1
Rethink, rewrite the intersect script - if too slow
#14
sapfo
closed
10 years ago
3
add a working test file for _anna and _victor
#13
sapfo
closed
11 years ago
1
Contour plot of clusters
#12
ole-tange
closed
10 years ago
2
A non issue.
#11
sapfo
closed
11 years ago
0
Create legend automatically from genotype file.
#10
sapfo
closed
11 years ago
1
Update flowchart with prettier names
#9
ole-tange
closed
11 years ago
2
Set up a skype meeting or get everyone to agree on the paper idea.
#8
sapfo
closed
11 years ago
0
Read multiple bam files
#7
ole-tange
closed
11 years ago
1
Ask Mike to lift HGDP and Hapmap3 to hg19.
#6
sapfo
closed
11 years ago
2
Write the paper....
#5
sapfo
closed
11 years ago
1
Select a journal and a type of paper.
#4
sapfo
closed
11 years ago
0
Read BED files
#3
ole-tange
closed
11 years ago
6
Select some publicly available individuals to test the pipeline and to use for simulations later on.
#2
sapfo
closed
10 years ago
3
Styling of plots
#1
ole-tange
closed
11 years ago
3
Previous
Next