issues
search
openvax
/
gtfparse
Parsing tools for GTF (gene transfer format) files
Apache License 2.0
108
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
No module named 'gtfparse.attribute_parsing'
#48
tamlupwhy
opened
5 hours ago
0
Update gtfparse to support pyarrow >=0.15
#47
jdcla
opened
1 month ago
1
Add write gtf feature - Issue #21
#46
Benoitdw
opened
2 months ago
1
ImportError: cannot import name table_to_blockmanager
#45
gokceneraslan
opened
5 months ago
1
Fix bug for records with ";" in the value
#44
y9c
opened
5 months ago
0
Bioconda wrong dependencies for version 2.1.0
#43
jpintar
opened
6 months ago
0
New polars version & misc improvements
#42
iskandr
closed
6 months ago
1
Incompatible with polars version >=0.17 due to usage of polars.toggle_string_cache
#41
stianlagstad
closed
6 months ago
4
Please do not use logging basicConfig for library software
#40
sjewell-biociphers
opened
9 months ago
0
Update read_gtf.py
#39
y9c
closed
6 months ago
9
BackTrace for exception when parsing gtf file
#38
borsheimFXBG
opened
11 months ago
1
How to iter a huge gtf file line by line ?
#37
galaxy001
opened
11 months ago
0
read_gtf has ERROR "scan_csv() got an unexpected keyword argument 'sep'"
#36
zbjbiubiubiu
opened
1 year ago
9
polars separator argument fixed and min polars version set to >=0.16.14
#35
rubidi02
closed
6 months ago
1
'sep' argument for polar.scan_csv has been renamed to 'seperator'.
#34
DriesSchaumont
closed
6 months ago
4
Add pyarrow to dependencies list
#33
acrinklaw
closed
5 months ago
0
Conversion to Pandas in read_gtf has missing dependency
#32
acrinklaw
opened
1 year ago
0
Faster parsing with Polars
#31
iskandr
closed
1 year ago
0
switch to pytest
#30
mdb571
closed
2 months ago
2
consider switching to pytest
#29
mdb571
closed
2 months ago
2
got rid of six dependency
#28
iskandr
closed
1 year ago
0
Pass features to parser with option to expand the attributes column
#27
sposadac
closed
1 year ago
1
Update read_gtf.py
#26
sclamons
closed
1 year ago
1
FutureWarning: The warn_bad_lines argument has been deprecated
#25
y9c
closed
1 year ago
1
Update read_csv params to on_bad_lines
#24
old-rob
closed
1 year ago
1
Attribute parsing fix
#23
abreschi
opened
2 years ago
0
FutureWarning
#22
niekwit
closed
1 year ago
0
Read_gtf but no write_gtf?
#21
rsalz
opened
2 years ago
5
Little edit
#20
EsmailELBoBDev2
closed
1 year ago
1
gtfparse.parsing_error.ParsingError: Integer column has NA values in column 3
#19
mictadlo
opened
3 years ago
0
Add `features=features` otherwise feature argument is not used.
#18
MuhammedHasan
closed
1 year ago
3
Recursion error while parsing gtf
#17
PedroBarbosa
closed
5 years ago
2
The column names are not correct
#16
petrokvitka
opened
5 years ago
0
deleted util module, which provided UNIX-specific access to memory usage
#15
iskandr
closed
5 years ago
2
drop features inside of each dataframe chunk before expanding its attribute columns
#14
iskandr
closed
5 years ago
1
Example of how to find a feature by gene_id or transcript_id
#13
golharam
opened
6 years ago
0
got rid of custom parsing and using pandas instead
#12
iskandr
closed
6 years ago
1
Add usecols
#11
iskandr
closed
6 years ago
1
Using lists for multi-attributes breaks datacache, combine as string instead
#10
iskandr
closed
6 years ago
1
Fixed multi-attribute parsing
#9
iskandr
closed
6 years ago
1
create list of multiple values for tag attributes
#8
iskandr
closed
6 years ago
0
use iloc instead of irow on Series because pandas changed between 0.19 and 0.22
#7
iskandr
closed
6 years ago
0
save all values comma separated instead of only the last one
#6
moritzschaefer
closed
6 years ago
8
util.py Depends on resource
#5
definitelysean
closed
5 years ago
3
PEP8 fixes, copyright update, put version in setup.py changed from irow to iat
#4
iskandr
closed
8 years ago
1
Tika Parser
#3
chrismattmann
closed
6 years ago
3
Tag annotations ignored when multiple are present
#2
xrobin
closed
6 years ago
1
First PR
#1
iskandr
closed
8 years ago
9