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openvax
/
varlens
commandline manipulation of genomic variants and NGS reads
Apache License 2.0
19
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2
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Update libraries
#31
timodonnell
closed
6 years ago
0
Depends on old pysam
#30
iskandr
closed
6 years ago
0
Output .bam
#29
JPFinnigan
opened
7 years ago
0
Update README.rst
#28
ihodes
closed
8 years ago
0
Variants mhc output peptides
#27
timodonnell
closed
6 years ago
0
Add option to create a window around a variant
#26
arahuja
closed
6 years ago
1
Require cython for pysam
#25
tavinathanson
closed
8 years ago
3
Remove GitHub pages from Travis config
#24
tavinathanson
closed
8 years ago
3
Deploy to PyPi with Travis?
#23
tavinathanson
closed
8 years ago
5
Output header to SAM file
#22
iskandr
opened
8 years ago
0
fix sam sorting error in varlens-reads
#21
timodonnell
closed
8 years ago
0
varlens-allele-support doesn't acceptable positional BAM argument
#20
iskandr
opened
8 years ago
2
Start 0.2 release
#19
timodonnell
closed
8 years ago
0
Drop python evaluation
#18
timodonnell
closed
8 years ago
0
get rid of the python-based dsl
#17
timodonnell
closed
8 years ago
0
More fixes
#16
timodonnell
closed
8 years ago
0
Drop url parsing logic
#15
timodonnell
closed
8 years ago
0
varlens-variants: add an annotation for membership in capture kit intervals
#14
timodonnell
opened
8 years ago
1
cleanup varlens and make a pip release
#13
timodonnell
closed
8 years ago
2
varlens-variants: correctly handle duplicate variants from multiple files
#12
timodonnell
closed
8 years ago
1
Moved ReadSource to read_source.py
#11
iskandr
closed
8 years ago
1
Failing unit tests
#10
iskandr
closed
8 years ago
2
Added numpy requirement
#9
e5c
closed
8 years ago
1
Three suggestions for reporting.
#8
JPFinnigan
closed
8 years ago
6
varlens allele support is too slow
#7
timodonnell
opened
9 years ago
1
support filtering variants by evidence
#6
timodonnell
opened
9 years ago
0
Support Python 3.X
#5
armish
closed
8 years ago
3
fix README image and improve Travis build
#4
armish
closed
9 years ago
5
Upgrade to pysam 0.8.4. Closes #1.
#3
timodonnell
closed
9 years ago
0
Add support for continuous integration with Travis
#2
armish
closed
9 years ago
1
Multiple tests fail on a vanilla installation
#1
armish
closed
9 years ago
2