openworm skeletonExtraction issues

openworm / skeletonExtraction

Transforms Sibernetic output into a COLLADA animation

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Making skeleton extraction very fast - maybe almost in real-time

#91 martinmadaras opened 9 years ago
2
Document the client side JS code

#90 martinmadaras closed 9 years ago
0
Refactor code so that three.js is as much as possible untouched

#89 gidili closed 9 years ago
1
Load multiple models for all muscles and cuticle from different collada files

#88 gidili closed 9 years ago
4
Is the COLLADA available in this repo?

#87 slarson closed 9 years ago
3
Try to change skinning matrices in tree.js in a way, that the code wont be inserted in tree.js, but in the html or another JS

#86 martinmadaras closed 9 years ago
1
Split the openworm skeleton extraction data - all the source code in github, all the data in dropbox folder

#85 martinmadaras closed 9 years ago
0
Write pipeline description into the readme file on github

#84 martinmadaras closed 9 years ago
0
When exporting the muscle meshes and cuticle mesh, change the names and ids of the object in collada file according to the iterator - it might be problem when more objects have the same ID

#83 martinmadaras closed 9 years ago
0
The translation of the skeleton root has to be encoded in the skinning matrices for each timestep

#82 martinmadaras closed 9 years ago
0
Export new set of skinning matrices with stretching transformation included

#81 martinmadaras closed 9 years ago
0
Find out, if small changes of node positions (worm shaking) can be solved by segment stretching, or some quaternion post-processing has to be applied

#80 martinmadaras closed 9 years ago
1
Export heuristic skinning weights to cuticle collada file

#79 martinmadaras closed 9 years ago
0
Implement exporting of skinning matrices composed of rotation and stretching

#78 martinmadaras closed 9 years ago
0
Modify JS client to work with more collada files - for cuticle and all the muscles

#77 martinmadaras closed 9 years ago
1
Find problem with discontinuity of skinning weights

#76 martinmadaras opened 9 years ago
1
Implement exporting of collada files for worm muscles - one file per muscle cell

#75 martinmadaras closed 9 years ago
1
Modify collada exporter to export compact skinned meshes - with two timesteps only

#74 martinmadaras closed 9 years ago
0
Find out, what minimal changes need to be done in tree.js renderer in order to replace fake collada skinning matrices with streamed skinning matrices extracted from the simulation

#73 martinmadaras closed 9 years ago
0
Get rid of translation of the worm during the simulation

#72 martinmadaras closed 9 years ago
1
Use loaded transformation matrices and run the skinning animation in tree.js

#71 martinmadaras closed 9 years ago
0
Find out, what changes to transformation matrices need to be done in order to use them in collada loader

#70 martinmadaras closed 9 years ago
0
Perform computation of MSE between all pairs of timesteps and find the best animation loop

#69 martinmadaras closed 9 years ago
1
Calculate new skeletons and skinning data from new simulation data

#68 martinmadaras closed 9 years ago
0
Check the new simulation data - if they describe one close animation loop

#67 martinmadaras closed 9 years ago
0
Make changes in simulation data loading code in order to use different simulation data for skinning data extraction

#66 martinmadaras closed 9 years ago
0
Data with cuticle and muscles do not correspond, cuticle is rotating more than muscles ... therefore only timestep 0 can be used as a bindpose

#65 martinmadaras closed 9 years ago
3
Calculate local SDF values for each skeleton segment in each timestep and store the data in text file

#64 martinmadaras closed 9 years ago
0
When everything is done, update/build SkeletonExtraction Openworm Wrapper and commit everything to github repo and data to dropbox

#63 martinmadaras closed 9 years ago
0
Reconstuct the surface of each muscle cell and export muscle mesh with calculated skinning data into Colada file

#62 martinmadaras closed 9 years ago
0
Create a dropbox folder and github folder with all the data needed for skinning animation

#61 martinmadaras closed 9 years ago
0
Load streamed transformation matrices and use them in colladaLoader.js

#60 martinmadaras closed 9 years ago
1
Calculate muscle skinning weights using projection in inward normal direction into cuticle triangulation

#59 martinmadaras opened 9 years ago
1
Apply inverse skinning on muscle particles in order to meassure the stretching coefficient of each muscle cell

#58 martinmadaras closed 9 years ago
0
Apply inverse skinning on muscle particles in order to meassure the stretching coefficient of each muscle cell and cuticle

#57 martinmadaras opened 9 years ago
1
What has to be send to the client

#56 martinmadaras closed 9 years ago
2
Implement extraction of skinning weights for muscle cells in order to apply cuticle skinning on muscles

#55 martinmadaras closed 9 years ago
0
Apply skinning algorithm of cuticle to muscle cells

#54 martinmadaras closed 9 years ago
0
Test whole skeleton extraction and skinning pipeline with more twisted cuticle as a bindpose mesh

#53 martinmadaras closed 9 years ago
5
Visualize skinning of muscle cells using both, cuticle and muscle transformations

#52 martinmadaras closed 9 years ago
1
Visualize simulation of muscle cells

#51 martinmadaras closed 9 years ago
0
Modify skeleton extraction, to produce skeleton segments with exactly the same length

#50 martinmadaras closed 9 years ago
1
Evaluate the skinning with different number of skeleton segments, eg. 10,20,30 ...

#49 martinmadaras closed 9 years ago
0
Create script that call wrapper method to loads particle positions for each timestep and export its transformation from bind pose skeleton

#48 martinmadaras closed 9 years ago
0
There is some memory leak in SDF library. It crashes after 12 timesteps (it leaks about 100MB per ts). For now, workaround is to call exe several times from script.

#47 martinmadaras opened 9 years ago
1
Implement binary search to find optimal threshold for median merging to produce the same number of skeleton segments in each timestep of simulation

#46 martinmadaras closed 9 years ago
0
Debug, why SDF lib is returning wrong normals after recalculation

#45 martinmadaras closed 9 years ago
0
Find out why SDF compuation gives different arrangment of values for ''assimp scene'' and '''vertex array'

#44 martinmadaras closed 9 years ago
1
Investigate, if it is needed to use skeleton matching to match skeletons with different number of segments

#43 martinmadaras closed 9 years ago
1
Export transformation matrices of all worm skeleton nodes for whole simulation sequence

#42 martinmadaras closed 9 years ago
0