issues
search
outbreak-info
/
R-outbreak-info
R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
https://outbreak-info.github.io/R-outbreak-info/
MIT License
19
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Bug: also pull recombinants in lookupSublineages
#109
flaneuse
opened
1 year ago
0
Register package on bioconductor
#108
flaneuse
opened
1 year ago
0
Select certain time period in plotAllLineagesByLocation
#107
B0HA0
opened
1 year ago
0
Remove GISAID tag for ggarrange graphs
#106
mobrien-15
opened
1 year ago
0
more accurate getPrevalence() warning for deletions
#105
TKMarkCheng
opened
1 year ago
1
Issues with GetPrevalence() when seraching for ONLY mutations
#104
TKMarkCheng
closed
1 year ago
8
Issue with authenticateUser(): A gpsapi error occured on the gps_authenticate page
#103
TKMarkCheng
closed
1 year ago
6
Possible to suppress "Is this a location of interest? (Y/N)" prompts?
#102
nrminor
opened
1 year ago
5
You have exceeded the API usage limit. Please limit the usage to 1 request/minute.
#101
AJFeng
closed
1 year ago
1
Problem with authenticateUser()
#100
josephhughes
opened
1 year ago
1
Is it possible to choose host: wastewater ?
#99
carlottaolivero
opened
1 year ago
0
Can locationName be more "specific" and identify regions?
#98
carlottaolivero
closed
1 year ago
2
Unable to plot latest data lineage prevalence
#97
farahishtiaq
opened
1 year ago
0
Unable to register GISAID credentials
#96
mecalderon
opened
1 year ago
6
Unable to install library(outbreakinfo)
#95
carlottaolivero
opened
1 year ago
4
Silent and intergenic mutations
#94
a-roguet
opened
1 year ago
0
Add a warning for URLs that are too long
#93
flaneuse
closed
1 year ago
0
`getAdmn1ByCountry` output is not equal to `getEpiData`
#92
watronfire
opened
1 year ago
0
`getAdmn2ByState` fails with any state name
#91
watronfire
closed
1 year ago
4
`getPrevalence` fails on no data
#90
flaneuse
closed
2 years ago
0
Update the `getCuratedLineages` function to include recombinant lineages
#89
flaneuse
opened
2 years ago
0
Unable to Install -
#88
alexlundberg
closed
1 year ago
3
Installation failure
#87
Kanyerezi30
closed
2 years ago
5
I could not use this library
#86
liumeng595
opened
2 years ago
1
Request: Add info from the summary table on outbreak.info Mutation Reports
#85
starlagthornhill
opened
2 years ago
1
Could the authenticate user function be updated to accept a username and password
#84
amishcode
opened
2 years ago
2
incorrect code for package installation on the website.
#83
eycramer
closed
2 years ago
1
Genomics API: more descriptive error message when unable to get prevalence of mutation for location
#82
EmilyHaag
opened
2 years ago
0
Genomics API: getPrevalence() does not accept deletions
#81
EmilyHaag
opened
2 years ago
1
Genomics API: Reauthenticating too frequently & function time lag
#80
EmilyHaag
closed
2 years ago
0
Is this manual still accurate?
#79
starlagthornhill
closed
2 years ago
6
genomics locations: can't get to a particular location
#78
flaneuse
opened
2 years ago
2
Create pkgdown.yml
#77
flaneuse
closed
2 years ago
0
Better error message for bad inputs to getLocationData
#76
flaneuse
opened
2 years ago
1
Clear documentation warnings from automated R pkg action
#75
flaneuse
closed
2 years ago
1
Add tester GH action
#74
flaneuse
closed
2 years ago
0
Need to check resources `fetchAll` for list/string inconsistencies
#73
flaneuse
opened
2 years ago
0
switch epi json parsing from jsonlite
#72
flaneuse
opened
2 years ago
0
schedule GH action to autobuild pkgdown website
#71
flaneuse
closed
2 years ago
0
edit general query description
#70
gtsueng
closed
2 years ago
0
Update epivignette.Rmd
#69
EmilyHaag
closed
2 years ago
0
Update outbreakinfo.Rmd
#68
EmilyHaag
closed
2 years ago
0
Update README.Rmd
#67
EmilyHaag
closed
2 years ago
1
Unable to install due to expired SSL certificate
#66
watronfire
closed
2 years ago
6
add resources to README
#65
flaneuse
closed
2 years ago
0
make resources vignette
#64
flaneuse
closed
2 years ago
0
expose Resources query
#63
flaneuse
closed
2 years ago
0
Dev
#62
sabahzero
closed
2 years ago
1
API edit
#61
sabahzero
closed
2 years ago
1
Issues with location lookup in getEpiData
#60
flaneuse
opened
2 years ago
0
Next