outbreak-info R-outbreak-info issues

outbreak-info / R-outbreak-info

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

https://outbreak-info.github.io/R-outbreak-info/

MIT License

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issues

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Bug: also pull recombinants in lookupSublineages

#109 flaneuse opened 1 year ago
0
Register package on bioconductor

#108 flaneuse opened 1 year ago
0
Select certain time period in plotAllLineagesByLocation

#107 B0HA0 opened 1 year ago
0
Remove GISAID tag for ggarrange graphs

#106 mobrien-15 opened 1 year ago
0
more accurate getPrevalence() warning for deletions

#105 TKMarkCheng opened 1 year ago
1
Issues with GetPrevalence() when seraching for ONLY mutations

#104 TKMarkCheng closed 1 year ago
8
Issue with authenticateUser(): A gpsapi error occured on the gps_authenticate page

#103 TKMarkCheng closed 1 year ago
6
Possible to suppress "Is this a location of interest? (Y/N)" prompts?

#102 nrminor opened 1 year ago
5
You have exceeded the API usage limit. Please limit the usage to 1 request/minute.

#101 AJFeng closed 1 year ago
1
Problem with authenticateUser()

#100 josephhughes opened 1 year ago
1
Is it possible to choose host: wastewater ?

#99 carlottaolivero opened 1 year ago
0
Can locationName be more "specific" and identify regions?

#98 carlottaolivero closed 1 year ago
2
Unable to plot latest data lineage prevalence

#97 farahishtiaq opened 2 years ago
0
Unable to register GISAID credentials

#96 mecalderon opened 2 years ago
6
Unable to install library(outbreakinfo)

#95 carlottaolivero opened 2 years ago
4
Silent and intergenic mutations

#94 a-roguet opened 2 years ago
0
Add a warning for URLs that are too long

#93 flaneuse closed 2 years ago
0
`getAdmn1ByCountry` output is not equal to `getEpiData`

#92 watronfire opened 2 years ago
0
`getAdmn2ByState` fails with any state name

#91 watronfire closed 2 years ago
4
`getPrevalence` fails on no data

#90 flaneuse closed 2 years ago
0
Update the `getCuratedLineages` function to include recombinant lineages

#89 flaneuse opened 2 years ago
0
Unable to Install -

#88 alexlundberg closed 1 year ago
3
Installation failure

#87 Kanyerezi30 closed 2 years ago
5
I could not use this library

#86 liumeng595 opened 2 years ago
1
Request: Add info from the summary table on outbreak.info Mutation Reports

#85 starlagthornhill opened 2 years ago
1
Could the authenticate user function be updated to accept a username and password

#84 amishcode opened 2 years ago
2
incorrect code for package installation on the website.

#83 eycramer closed 2 years ago
1
Genomics API: more descriptive error message when unable to get prevalence of mutation for location

#82 EmilyHaag opened 2 years ago
0
Genomics API: getPrevalence() does not accept deletions

#81 EmilyHaag opened 2 years ago
1
Genomics API: Reauthenticating too frequently & function time lag

#80 EmilyHaag closed 2 years ago
0
Is this manual still accurate?

#79 starlagthornhill closed 2 years ago
6
genomics locations: can't get to a particular location

#78 flaneuse opened 3 years ago
2
Create pkgdown.yml

#77 flaneuse closed 3 years ago
0
Better error message for bad inputs to getLocationData

#76 flaneuse opened 3 years ago
1
Clear documentation warnings from automated R pkg action

#75 flaneuse closed 3 years ago
1
Add tester GH action

#74 flaneuse closed 3 years ago
0
Need to check resources `fetchAll` for list/string inconsistencies

#73 flaneuse opened 3 years ago
0
switch epi json parsing from jsonlite

#72 flaneuse opened 3 years ago
0
schedule GH action to autobuild pkgdown website

#71 flaneuse closed 2 years ago
0
edit general query description

#70 gtsueng closed 3 years ago
0
Update epivignette.Rmd

#69 EmilyHaag closed 3 years ago
0
Update outbreakinfo.Rmd

#68 EmilyHaag closed 3 years ago
0
Update README.Rmd

#67 EmilyHaag closed 3 years ago
1
Unable to install due to expired SSL certificate

#66 watronfire closed 3 years ago
6
add resources to README

#65 flaneuse closed 3 years ago
0
make resources vignette

#64 flaneuse closed 3 years ago
0
expose Resources query

#63 flaneuse closed 3 years ago
0
Dev

#62 sabahzero closed 3 years ago
1
API edit

#61 sabahzero closed 3 years ago
1
Issues with location lookup in getEpiData

#60 flaneuse opened 3 years ago
0