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pangenome
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odgi
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
https://doi.org/10.1093/bioinformatics/btac308
MIT License
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write highlights over the rasterized image
#547
ekg
closed
9 months ago
1
odgi build cannot process HPRC minigraph gfa
#546
adadiehl
closed
10 months ago
3
Depth question
#545
jonahcullen
closed
10 months ago
3
`odgi stats`: deactivate 1D layout metrics in MultiQC mode
#544
subwaystation
closed
10 months ago
0
unable to untangle injected graph
#543
michael-olufemi
opened
10 months ago
3
odgi viz, display for whole chromosomes
#542
Rktf
closed
10 months ago
2
`odgi paths ... --non-reference-nodes`: emit also node length
#541
AndreaGuarracino
closed
11 months ago
0
Is there a recommended way to generate phylogenetic tree
#540
zhangting1991
closed
9 months ago
1
make svg drawing work with colors
#539
ekg
closed
12 months ago
2
depth: option to use unique window depths
#538
kdm9
closed
1 year ago
1
skeleton for performance evaluation
#537
subwaystation
opened
1 year ago
0
Failing to inject path into og file while using odgi -inject
#536
gavinieong
opened
1 year ago
1
Nix building
#535
ekg
closed
1 year ago
0
`odgi paths -H` on subgraphs
#534
AndreaGuarracino
closed
1 year ago
0
Translating path coordinates to flattened pangenome coordinates
#533
gputzel
opened
1 year ago
1
Defining reference path on graph
#532
ManuelTgn
opened
1 year ago
3
`odgi extract`: manage input path range boundaries
#531
AndreaGuarracino
closed
1 year ago
0
order of species in odgi viz
#530
isabelladistefano
closed
2 months ago
1
Does the "odgi sort " truncate the path?
#529
hui-liu
opened
1 year ago
1
`odgi extract`: a bit more aggressive subpath merging by default
#528
AndreaGuarracino
closed
1 year ago
0
Issue with compacting path names using odgi -viz
#527
gavinieong
closed
1 year ago
4
`odgi extract` - please remove nodes that are not in specified BED range(s)
#526
subwaystation
opened
1 year ago
9
`odgi extract`: check there are no duplicated path ranges
#525
AndreaGuarracino
closed
1 year ago
0
question on discrepancy between 1D and 2D visualization
#524
jyj5558
closed
1 year ago
2
`odgi paths`: show non-reference nodes and path/step ranges
#523
AndreaGuarracino
closed
1 year ago
0
`odgi extract` refresh: add `-O/--optimize` option and put `-d` by default
#522
AndreaGuarracino
closed
1 year ago
1
building odgi with Cactus downloadPangenomeTools results in c++: fatal error: Killed signal terminated program cc1plus
#521
SomePersonSomeWhereInTheWorld
opened
1 year ago
8
Avoid out of bound (segfault) in `odgi similarity`
#520
AndreaGuarracino
closed
1 year ago
0
odgi similarity segfault with multiple threads
#519
ASLeonard
closed
1 year ago
9
Extending existing graph with long reads
#518
BaxW
opened
1 year ago
2
Progress in `odgi pav`
#517
AndreaGuarracino
closed
1 year ago
0
odgi extract error
#516
GeorgeBGM
opened
1 year ago
23
Extending a region with edges!
#515
coevolutionlab
opened
1 year ago
2
heaps: plot down to 0 on the y-axis
#514
subwaystation
closed
1 year ago
0
add macos to CI
#513
kojix2
closed
9 months ago
6
Add missing library
#512
kojix2
closed
1 year ago
1
Extracting paths corresponding to a list of nodes
#511
sdws1983
opened
1 year ago
0
Fix `applying_ordering`
#510
AndreaGuarracino
closed
1 year ago
0
`odgi heaps`: avoid missing groups
#509
AndreaGuarracino
closed
1 year ago
0
Less verbose logging
#508
AndreaGuarracino
closed
1 year ago
0
fix ODGI for GCC 13.1
#507
subwaystation
closed
1 year ago
0
odgi compilation error
#506
subwaystation
closed
1 year ago
1
odgi heaps for subsets of samples
#505
mb47
closed
1 year ago
4
hifiasm GFA to OG
#504
jiadong324
closed
1 year ago
2
Interpreting output from heaps_fit.R
#503
mb47
closed
1 year ago
8
Is odgi overlap optimized for reciprocal overlaps?
#502
cgroza
opened
1 year ago
2
fix odgi untangle PAF output bug
#501
AndreaGuarracino
closed
1 year ago
0
add conda-forge to conda installation instructions
#500
aryarm
closed
1 year ago
1
Visualise specific positions of a chromsome
#499
hzlnutspread
opened
1 year ago
9
New `odgi similarity` command
#498
AndreaGuarracino
closed
1 year ago
1
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