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parklab
/
MosaicForecast
A mosaic detecting software based on phasing and random forest
MIT License
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Resource file "predictedhap3ormore_cluster.GRCh38.bed" is not accessible.
#43
Jonathanyu2014
opened
2 days ago
1
Question on Training RF Models with Refined Genotypes
#42
JunhuiLi1017
closed
7 months ago
2
Inconsistent row number among input bed, features and genotype
#41
HelloYanming
closed
7 months ago
1
predictedhap3ormore_cluster.GRCh38.bed not in place
#40
dragonf97
closed
8 months ago
2
Unable to retrieve the predictions (i.e low confidence Mosaic)
#39
ngs1810
opened
1 year ago
1
Snakefile workflow
#38
dongjuleem
closed
1 year ago
1
37th line of args_generator.py
#37
dongjuleem
closed
1 year ago
4
use of bam files located in the Snakemake/bam_links_PON path
#36
dongjuleem
closed
1 year ago
1
Can I use MosaicForecast for ~30X WGS dataset?
#35
changhan1110
opened
1 year ago
1
Combine the normal calls from mulusing CreateSomaticPanelOfNormals
#34
dongjuleem
closed
1 year ago
2
Regions enriched for SNVs with >=3 haplotypes file download.
#33
dongjuleem
closed
1 year ago
1
Need help for quality filtering of indels
#32
jekim2022
opened
1 year ago
2
Problem with ReadLevel_Features_extraction.py
#31
bryanfisk
opened
1 year ago
0
bug report on ReadLevel_Features_extraction.py
#30
JunhuiLi1017
opened
1 year ago
4
Update MuTect2-PoN_filter.py
#29
douym
opened
2 years ago
0
Update MuTect2-PoN_filter.py
#28
douym
opened
2 years ago
0
Update MuTect2-PoN_filter.py
#27
ghost
closed
2 years ago
0
question from MuTect2-PoN_filter.py
#26
mjko1210
closed
1 year ago
1
Mf snakemake vinayakvsv
#25
vinayakvsv
opened
2 years ago
1
installation stuck at solving environment
#24
mmlian05
closed
1 year ago
1
MF on exomes
#23
gevro
closed
3 years ago
3
Failure to extract read features in MF
#22
bwzee
closed
3 years ago
4
50xRFmodel_addRMSK_Refine not working
#21
gevro
closed
3 years ago
1
Recommended filters for Mutect2
#20
gevro
closed
3 years ago
4
Recommended filters from Mutect2 Filtermutectcalls
#19
gevro
closed
3 years ago
2
Final result filtering
#18
gevro
closed
3 years ago
11
/etc/localtime warning
#17
gevro
closed
3 years ago
4
Error: "Wrong number of items passed"
#16
gevro
closed
3 years ago
9
Phase.py
#15
gevro
closed
3 years ago
2
regions to filter out
#14
sabrinacamp2
closed
4 years ago
1
Mappability score of Zero
#13
jgunti-code
closed
3 years ago
13
Refined Models for Indels
#12
Rob-Schuetz
closed
4 years ago
2
Generating input for train RF model
#11
jgunti-code
closed
4 years ago
2
Docker ReadLevel_Features_extraction.py fails
#10
cccnrc
closed
4 years ago
3
MuTect2-PON.py - multiallelic values
#9
vmscmams
closed
4 years ago
7
Error: "check the format of your input file"
#8
vmscmams
closed
4 years ago
2
Errors during run
#7
wdecoster
closed
4 years ago
12
File predictedhap3ormore_cluster.GRCh38.bed not included
#6
wdecoster
closed
4 years ago
3
Phase.py
#5
jgunti-code
closed
4 years ago
2
wigToBigWig does not work
#4
wangxuedong930227
closed
4 years ago
5
Convert MosaicForecast predictions to VCF
#3
attilagk
opened
5 years ago
0
Docker image: /MF/demo missing
#2
attilagk
closed
5 years ago
1
test
#1
douym
closed
6 years ago
0