pelkmanslab TissueMAPS-OLD issues

pelkmanslab / TissueMAPS-OLD

Old TissueMAPS code (until 2016); please use pelkmanslab/TissueMAPS instead.

http://github.com/pelkmanslba/TissueMAPS

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issues

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Database connection issue while downloading and processing simultaneously

#72 scottberry closed 7 years ago
3
'Current result' shows classification before classification is actually finished

#71 reinouddegroot opened 7 years ago
0
Download issue: Big dataset runs into issues

#70 jluethi opened 7 years ago
2
Using 4-connected component labeling

#69 hackermd closed 7 years ago
3
Separate Clumps module causes loss of Nuclei

#68 jluethi opened 7 years ago
1
Chimp: Server error on file upload

#67 jluethi opened 7 years ago
7
chimp jterator pipeline failure to save objects

#66 scottberry closed 7 years ago
1
separate_clumps module shrinks nuclei segmentation

#65 reinouddegroot closed 7 years ago
4
memory error in detect_blobs

#64 scottberry opened 7 years ago
3
Deleting images after processing makes access to pipeline impossible

#63 jluethi opened 7 years ago
0
Status labels in interface and on command line are wrong

#62 jluethi opened 7 years ago
1
Saving spots as polygon currently fails

#61 jluethi opened 7 years ago
0
TM mixing stuff

#60 maffka123 opened 7 years ago
2
Is it possible to have 2 figures in jtmodules?

#59 maffka123 opened 7 years ago
0
Border cells: only bottom & right borders intersect with cells

#58 jluethi closed 7 years ago
1
Metaconfig fails on the datasets larger than 2 wells

#57 maffka123 closed 7 years ago
0
Standard output and standard error are not displayed in User interface anymore

#56 jluethi closed 7 years ago
5
Tm_Client fails when downloading bigger dataset

#55 jluethi opened 7 years ago
8
3D Time Series Experiment Failed at Pyramid Creation

#54 SaadiaIftikhar opened 7 years ago
1
can not save objects in 3D modules - datasets

#53 SaadiaIftikhar opened 7 years ago
2
tm_client crashes if non wanted files are in upload directory

#52 jluethi closed 7 years ago
2
job not dying

#51 alecrimi closed 7 years ago
2
Slurm down?

#50 alecrimi closed 7 years ago
1
Pipeline cannot be saved (TM tries to save it automatically after each submission)

#49 maffka123 opened 7 years ago
12
TMclient adds images of the new experiment to the images of the all old experiments

#48 maffka123 opened 7 years ago
0
gc3libs ERROR

#47 maffka123 opened 7 years ago
0
Something with the viewer

#46 maffka123 opened 7 years ago
0
Image conversion not finding tmlibrary

#45 alecrimi closed 7 years ago
7
Upload Jterator Module Button

#44 SaadiaIftikhar opened 7 years ago
1
Upload Classifier Button

#43 SaadiaIftikhar opened 7 years ago
1
workflow status not updated

#42 MarioMajchrzak opened 7 years ago
1
tmclient fails when filename contains a #

#41 jluethi closed 7 years ago
1
Empty job list

#40 maffka123 opened 7 years ago
0
Detect Blobs module failed

#39 dorispgithub opened 7 years ago
2
Silent submission failures on http://130.60.24.212/

#38 jluethi opened 7 years ago
0
SearchFirst plate failed at metaconfig

#37 SaadiaIftikhar opened 7 years ago
4
Job description file does not exist

#36 apiehl opened 7 years ago
1
threshold update

#35 apiehl opened 7 years ago
3
New Jterator modules

#34 SaadiaIftikhar opened 7 years ago
1
Pipeline: substract background/intensity measurement

#33 maffka123 opened 7 years ago
1
Not all channels in 3D dataset update in viewer when using z-slider

#32 scottberry closed 7 years ago
7
Metadata assignment issue with 3D yokogawa images

#31 scottberry closed 7 years ago
9
Batch size not visible in illumination correction

#30 scottberry closed 7 years ago
1
Resubmit from sub-tasks

#29 scottberry opened 7 years ago
1
workflow continuously processing on pyramid creation on small test datasets

#28 SaadiaIftikhar closed 7 years ago
15
adding a new user to the server

#27 SaadiaIftikhar closed 7 years ago
1
TM 0.2.0: Problems in the viewer & can't submit SVM

#26 jluethi opened 7 years ago
10
Jterator dependency problem in 0.2.0

#25 jluethi opened 7 years ago
4
automatic pgdump for writing csv files of image locations on filesystem

#24 scottberry opened 7 years ago
0
HTTPError: 500 Server Error

#23 Christophe-Freyre closed 7 years ago
8