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phac-nml-phrsd
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R library to estimate the Effective Reproduction Number (Rt)
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EpiNow2 paper follow up
#214
seabbs
opened
4 months ago
2
remove `summarise_by_date_ens()` and its documentation
#213
papsti
closed
6 months ago
2
Post sampling final
#212
davidchampredon
closed
6 months ago
0
fixes based on ms revisions
#211
papsti
closed
7 months ago
0
generate pkgdown site
#210
papsti
opened
7 months ago
0
update vignettes using examples from ms
#209
papsti
opened
7 months ago
0
error running `estimate_R_cl()` for `prm.daily$method = "linear"` even though JAGS installed
#208
papsti
closed
7 months ago
0
add option to wrap diagnostic plots
#207
davidchampredon
closed
7 months ago
0
update documentation
#206
papsti
closed
7 months ago
1
improve data description
#205
davidchampredon
closed
8 months ago
1
improve test coverage
#204
davidchampredon
opened
9 months ago
0
change special treatment for `unif` distributions
#203
davidchampredon
opened
9 months ago
0
Version 1.6.0
#202
wyusuf068
closed
9 months ago
1
New method (linear interpolation) for Rt clinical
#201
davidchampredon
closed
9 months ago
1
Expand support of def_dist() for more distributions
#200
wyusuf068
opened
9 months ago
0
replace stopifnot with assert_that
#199
davidchampredon
closed
9 months ago
0
Version 1.4.0
#198
wyusuf068
closed
9 months ago
1
silence message recently added
#197
davidchampredon
closed
9 months ago
1
MCMC diagnostics for `estimate_R_cl()`
#196
davidchampredon
closed
9 months ago
1
function to retrieve/plot MCMC diagnostics
#195
papsti
closed
9 months ago
1
split out `plot_diagnostic_xx()` funs for individual panels
#194
papsti
closed
7 months ago
1
remove default distributions from package
#193
papsti
closed
9 months ago
1
enable use of multiple parameters for the same distribution
#192
papsti
opened
9 months ago
2
add support for correlated distribution parameters?
#191
papsti
opened
9 months ago
0
add time-varying scaling factor?
#190
papsti
opened
9 months ago
0
fixes for CRAN (re)submission
#189
davidchampredon
closed
10 months ago
1
Getting cran ready
#188
davidchampredon
closed
10 months ago
1
Doc examples
#187
davidchampredon
closed
10 months ago
0
fix minor issues with documentation
#186
davidchampredon
closed
10 months ago
1
Add `@title` for all internal functions
#185
davidchampredon
closed
10 months ago
0
hyper param for JAGS priors as input argument
#184
davidchampredon
closed
10 months ago
2
Examples for _all_ documented functions
#183
davidchampredon
closed
10 months ago
0
review/modify which functions are exported vs internal
#182
papsti
closed
10 months ago
2
Faster vignette creation
#181
davidchampredon
closed
10 months ago
1
customizable hyper-parameters
#180
davidchampredon
closed
10 months ago
1
CRAN submission
#179
davidchampredon
closed
9 months ago
1
heuristic fix to initial high clinical Rt
#178
davidchampredon
closed
11 months ago
1
update test coverage gh action
#177
wyusuf068
closed
11 months ago
1
fix sampling bug
#176
davidchampredon
closed
11 months ago
0
change clinical data
#175
davidchampredon
closed
11 months ago
1
set up pkgdown site once vignettes are updated
#174
papsti
closed
10 months ago
2
regenerate pkg vignettes using manscript
#173
papsti
closed
10 months ago
3
clinical tweaks in prep for manuscript
#172
papsti
closed
11 months ago
1
why does clinical Rt timeseries surge at the start?
#171
papsti
closed
11 months ago
1
crop output consistently between `ww` and `cl`
#170
papsti
closed
11 months ago
8
convert `%>%` to `|>` to remove dependency on `magrittr`
#169
papsti
closed
11 months ago
1
get better sample of data for `cl.input`
#168
papsti
closed
11 months ago
0
make output of `plot_diagnostic_xx()` consistent between `ww` and `cl`
#167
papsti
closed
11 months ago
0
switch to dev version of EpiEstim
#166
papsti
closed
1 year ago
0
v1.1.2
#165
wyusuf068
closed
1 year ago
1
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