phac-nml-phrsd ern issues

phac-nml-phrsd / ern

R library to estimate the Effective Reproduction Number (Rt)

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EpiNow2 paper follow up

#214 seabbs opened 2 months ago
2
remove `summarise_by_date_ens()` and its documentation

#213 papsti closed 3 months ago
2
Post sampling final

#212 davidchampredon closed 4 months ago
0
fixes based on ms revisions

#211 papsti closed 5 months ago
0
generate pkgdown site

#210 papsti opened 5 months ago
0
update vignettes using examples from ms

#209 papsti opened 5 months ago
0
error running `estimate_R_cl()` for `prm.daily$method = "linear"` even though JAGS installed

#208 papsti closed 5 months ago
0
add option to wrap diagnostic plots

#207 davidchampredon closed 5 months ago
0
update documentation

#206 papsti closed 5 months ago
1
improve data description

#205 davidchampredon closed 5 months ago
1
improve test coverage

#204 davidchampredon opened 6 months ago
0
change special treatment for `unif` distributions

#203 davidchampredon opened 6 months ago
0
Version 1.6.0

#202 wyusuf068 closed 6 months ago
1
New method (linear interpolation) for Rt clinical

#201 davidchampredon closed 7 months ago
1
Expand support of def_dist() for more distributions

#200 wyusuf068 opened 7 months ago
0
replace stopifnot with assert_that

#199 davidchampredon closed 7 months ago
0
Version 1.4.0

#198 wyusuf068 closed 7 months ago
1
silence message recently added

#197 davidchampredon closed 7 months ago
1
MCMC diagnostics for `estimate_R_cl()`

#196 davidchampredon closed 7 months ago
1
function to retrieve/plot MCMC diagnostics

#195 papsti closed 7 months ago
1
split out `plot_diagnostic_xx()` funs for individual panels

#194 papsti closed 5 months ago
1
remove default distributions from package

#193 papsti closed 6 months ago
1
enable use of multiple parameters for the same distribution

#192 papsti opened 7 months ago
2
add support for correlated distribution parameters?

#191 papsti opened 7 months ago
0
add time-varying scaling factor?

#190 papsti opened 7 months ago
0
fixes for CRAN (re)submission

#189 davidchampredon closed 7 months ago
1
Getting cran ready

#188 davidchampredon closed 7 months ago
1
Doc examples

#187 davidchampredon closed 7 months ago
0
fix minor issues with documentation

#186 davidchampredon closed 8 months ago
1
Add `@title` for all internal functions

#185 davidchampredon closed 8 months ago
0
hyper param for JAGS priors as input argument

#184 davidchampredon closed 8 months ago
2
Examples for _all_ documented functions

#183 davidchampredon closed 7 months ago
0
review/modify which functions are exported vs internal

#182 papsti closed 8 months ago
2
Faster vignette creation

#181 davidchampredon closed 7 months ago
1
customizable hyper-parameters

#180 davidchampredon closed 8 months ago
1
CRAN submission

#179 davidchampredon closed 7 months ago
1
heuristic fix to initial high clinical Rt

#178 davidchampredon closed 8 months ago
1
update test coverage gh action

#177 wyusuf068 closed 9 months ago
1
fix sampling bug

#176 davidchampredon closed 9 months ago
0
change clinical data

#175 davidchampredon closed 9 months ago
1
set up pkgdown site once vignettes are updated

#174 papsti closed 7 months ago
2
regenerate pkg vignettes using manscript

#173 papsti closed 7 months ago
3
clinical tweaks in prep for manuscript

#172 papsti closed 9 months ago
1
why does clinical Rt timeseries surge at the start?

#171 papsti closed 8 months ago
1
crop output consistently between `ww` and `cl`

#170 papsti closed 9 months ago
8
convert `%>%` to `|>` to remove dependency on `magrittr`

#169 papsti closed 9 months ago
1
get better sample of data for `cl.input`

#168 papsti closed 9 months ago
0
make output of `plot_diagnostic_xx()` consistent between `ww` and `cl`

#167 papsti closed 9 months ago
0
switch to dev version of EpiEstim

#166 papsti closed 9 months ago
0
v1.1.2

#165 wyusuf068 closed 9 months ago
1