phasegenomics hic_qc issues

phasegenomics / hic_qc

A (very) simple script to QC Hi-C data.

GNU Affero General Public License v3.0

25 stars 5 forks source link

issues

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Bump scipy from 1.1.0 to 1.10.0

#74 dependabot[bot] opened 1 year ago
0
Bump numpy from 1.13.3 to 1.22.0

#73 dependabot[bot] closed 2 years ago
0
HiCQC' object has no attribute 'ref_assembly

#72 ardy20 opened 2 years ago
3
Fix typo in edit distance filter logic

#71 shawnpg closed 2 years ago
0
Dev

#70 shawnpg closed 3 years ago
0
Fix bwa mem2

#69 shawnpg closed 3 years ago
3
Enable/disable report option update

#68 bnelsj closed 3 years ago
0
Bugfix/interleaved header

#67 bnelsj closed 3 years ago
0
Set version for pysam and matplotlib in conda create command

#66 bnelsj closed 3 years ago
0
Merge dev to master

#65 bnelsj closed 3 years ago
0
The --make_report flag doesn't get used

#64 aakashsur closed 3 years ago
1
Merge master into dev

#63 bnelsj closed 3 years ago
0
Bugfix/mpl kwargs

#62 bnelsj closed 3 years ago
0
Bugfix/interleaved header

#61 bnelsj closed 3 years ago
0
ERROR provided too many kwargs,

#60 ddelgadillod closed 3 years ago
3
Add more detailed checking if the fwd and rev reads were the same

#59 shawnpg closed 3 years ago
3
Improved HQ read calculation

#58 shawnpg closed 3 years ago
0
Merge dev -> master

#57 shawnpg closed 3 years ago
0
Feature/2to3

#56 hhayleyj closed 4 years ago
3
Fixed issue with bad name in write_pdf_report

#55 bnelsj closed 4 years ago
1
qc_repo_path not defined in write_pdf_report()

#54 chuseq closed 4 years ago
2
Python setup.py install ERROR!!!

#53 timmy304681 closed 3 years ago
2
Dev

#52 shawnpg closed 3 years ago
1
Add bwa params and enzyme

#51 hhayleyj closed 4 years ago
0
Update HiC_QC_report_template.md

#50 mgrout81 closed 3 years ago
2
Add direct dt comps

#49 hhayleyj closed 4 years ago
1
Errow when installing hic_qc

#48 freelongsong closed 3 years ago
2
AttributeError: 'dict' object has no attribute 'references'

#47 aakashsur closed 5 years ago
2
Dev to master

#46 bnelsj closed 5 years ago
0
Dev to master

#45 bnelsj closed 5 years ago
0
Bugfix/fix logging error and update metrics

#44 bnelsj closed 5 years ago
0
Dev

#43 bnelsj closed 5 years ago
0
Update Readme.md

#42 bnelsj closed 5 years ago
0
Bugfix/handle empty bam

#41 bnelsj closed 5 years ago
0
Clear out read variables so we don't accidentally count reads twice i…

#40 shawnpg closed 4 years ago
3
clarify conda install.

#39 maximilianpress closed 5 years ago
0
Merge pull request #37 from phasegenomics/master

#38 shawnpg closed 5 years ago
0
Merge master to dev

#37 shawnpg closed 5 years ago
0
Update thresholds and tests

#36 shawnpg closed 5 years ago
0
Name fixes

#35 bnelsj closed 5 years ago
0
Merge dev into master

#34 shawnpg closed 5 years ago
1
Updated bam_to_mate_hist refs to hic_qc

#33 bnelsj closed 5 years ago
0
Update color pallate to not be so severe

#32 shawnpg closed 5 years ago
0
QC report updates

#31 shawnpg closed 5 years ago
1
Update Readme.md

#30 bnelsj closed 5 years ago
0
Build hotfix

#29 bnelsj closed 5 years ago
0
Updating conda install guide to work and to match the travis build.

#28 maximilianpress closed 5 years ago
0
Fix divide by zero issue in log-log plot

#27 bnelsj closed 5 years ago
0
Update Readme.md

#26 shawnpg closed 5 years ago
2
Update versioning

#25 bnelsj closed 5 years ago
1