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phenomecentre
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nPYc-Toolbox
The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets.
MIT License
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varianceRatio SOP may lead to data leakage for ML applications
#113
misch91
opened
1 month ago
0
ImportError: cannot import name 'interp' from 'scipy'
#112
kopeckylukas
opened
7 months ago
2
Merge pull request #110 from phenomecentre/master
#111
carolinesands
closed
1 year ago
1
Updating develop to match master
#110
carolinesands
closed
1 year ago
1
Develop
#109
carolinesands
closed
1 year ago
1
Feature/caroline
#108
carolinesands
closed
1 year ago
1
Feature/bruker biquant
#107
duibuqi
closed
1 year ago
1
Feature/fix setup.py
#106
gordondavies
closed
1 year ago
0
Merge from master to feature branch
#105
gordondavies
closed
1 year ago
0
Remove isatools and release
#104
gordondavies
closed
1 year ago
1
removed isatools code, functionality, and dependency
#103
gordondavies
closed
1 year ago
2
Create new branch for tasks
#102
gordondavies
opened
1 year ago
0
Create new MSTargetedDataset
#101
gordondavies
opened
1 year ago
0
Create new Targetlynx QC functions, from Caroline's existing notebook.
#100
gordondavies
opened
1 year ago
0
Create new NMRTargetedDataset
#99
gordondavies
opened
1 year ago
0
Add sMolESY-profile importer to NMRDataset
#98
gordondavies
opened
1 year ago
0
Add new Proteomics Dataset object which extends MSDataset.
#97
gordondavies
opened
1 year ago
0
Feature/fix unit tests
#96
gordondavies
closed
1 year ago
2
Test PR - only a single empty line has changed from develop
#95
gordondavies
closed
1 year ago
1
Fixing the failing unit tests in develop
#94
gordondavies
closed
1 year ago
0
Develop
#93
Gscorreia89
closed
2 years ago
1
Develop
#92
Gscorreia89
closed
2 years ago
0
Feature/batch correction updates
#91
Gscorreia89
closed
1 year ago
1
Feature/ms import updates
#90
Gscorreia89
closed
2 years ago
1
Feature/batch correction updates
#89
Gscorreia89
closed
2 years ago
1
Batch Correction changes all values to 0
#88
misch91
opened
2 years ago
4
Revert "added import for XCMSonline, MZmine, MS-DIAL and nPYc exported data"
#87
Gscorreia89
closed
2 years ago
0
added import for XCMSonline, MZmine, MS-DIAL and nPYc exported data
#86
misch91
closed
2 years ago
0
Import CSV, MS-DIAL, MZmine
#85
misch91
opened
2 years ago
7
master updates nov 2021
#84
Gscorreia89
closed
2 years ago
1
Reports tailored for studies with replicate injections of samples
#83
Gscorreia89
opened
2 years ago
0
Agreggation of intensity values
#82
Gscorreia89
opened
2 years ago
0
More flexible precision calculation
#81
Gscorreia89
opened
2 years ago
0
how to access the actual spectral data for further analysis: normalization/scaling, PCA, PLS, STOCSY, etc.
#80
RicardoMBorges
opened
3 years ago
2
Missing xlrd dependency as part of installation
#79
carolinesands
opened
3 years ago
0
Develop
#78
Gscorreia89
closed
3 years ago
1
Failure reading NMR data from different windows drives
#77
Gscorreia89
closed
3 years ago
1
Add unittests and test data for Bruker ivDr version 2
#76
Gscorreia89
opened
3 years ago
0
Separate 'Feature ID' from 'Chemical/Compound' IDs and names
#75
Gscorreia89
opened
3 years ago
0
Improve plotting functions - choice of color and general feature plots
#74
Gscorreia89
opened
3 years ago
1
added correctionSampleType to correctMSdataset to enable correction a…
#73
Gscorreia89
closed
2 years ago
1
Added correctionSampleType to batch correction
#72
gordondavies
closed
3 years ago
1
Improvements to batch correction module - specify correction sample.
#71
Gscorreia89
opened
3 years ago
2
Deprecation warning due to numpy.matlib on multivariateUtilities
#70
Gscorreia89
closed
3 years ago
1
Develop
#69
Gscorreia89
closed
3 years ago
1
issue with some of the multivariate reports due to changes in seaborn swarmplot
#68
Gscorreia89
closed
3 years ago
1
Feature/mz ml import
#67
Gscorreia89
closed
3 years ago
1
use of 'nonposy' argument deprecated
#66
Gscorreia89
closed
3 years ago
1
fix for 'nonposy' deprecation in ax.set_xscale/set_yscale
#65
Gscorreia89
closed
3 years ago
1
fix for 'nonposy' deprecation in ax.set_xscale/set_yscale
#64
Gscorreia89
closed
3 years ago
0
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